Paramagnetic NMR in drug discovery.
Drug discovery
Fragment screening
Nuclear magnetic resonance
Paramagnetic relaxation enhancement
Paramagnetism
Protein–ligand structure determination
Pseudo-contact shift
Journal
Journal of biomolecular NMR
ISSN: 1573-5001
Titre abrégé: J Biomol NMR
Pays: Netherlands
ID NLM: 9110829
Informations de publication
Date de publication:
Jul 2020
Jul 2020
Historique:
received:
12
03
2020
accepted:
26
05
2020
pubmed:
12
6
2020
medline:
22
4
2021
entrez:
12
6
2020
Statut:
ppublish
Résumé
The presence of an unpaired electron in paramagnetic molecules generates significant effects in NMR spectra, which can be exploited to provide restraints complementary to those used in standard structure-calculation protocols. NMR already occupies a central position in drug discovery for its use in fragment screening, structural biology and validation of ligand-target interactions. Paramagnetic restraints provide unique opportunities, for example, for more sensitive screening to identify weaker-binding fragments. A key application of paramagnetic NMR in drug discovery, however, is to provide new structural restraints in cases where crystallography proves intractable. This is particularly important at early stages in drug-discovery programs where crystal structures of weakly-binding fragments are difficult to obtain and crystallization artefacts are probable, but structural information about ligand poses is crucial to guide medicinal chemistry. Numerous applications show the value of paramagnetic restraints to filter computational docking poses and to generate interaction models. Paramagnetic relaxation enhancements (PREs) generate a distance-dependent effect, while pseudo-contact shift (PCS) restraints provide both distance and angular information. Here, we review strategies for introducing paramagnetic centers and discuss examples that illustrate the utility of paramagnetic restraints in drug discovery. Combined with standard approaches, such as chemical shift perturbation and NOE-derived distance information, paramagnetic NMR promises a valuable source of information for many challenging drug-discovery programs.
Identifiants
pubmed: 32524233
doi: 10.1007/s10858-020-00322-0
pii: 10.1007/s10858-020-00322-0
pmc: PMC7311382
doi:
Substances chimiques
Ligands
0
Proteins
0
Spin Labels
0
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
287-309Subventions
Organisme : H2020 Marie Skłodowska-Curie Actions
ID : 675555
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