Analytical results for non-Markovian models of bursty gene expression.


Journal

Physical review. E
ISSN: 2470-0053
Titre abrégé: Phys Rev E
Pays: United States
ID NLM: 101676019

Informations de publication

Date de publication:
May 2020
Historique:
received: 11 04 2019
accepted: 24 03 2020
entrez: 25 6 2020
pubmed: 25 6 2020
medline: 1 5 2021
Statut: ppublish

Résumé

Modeling stochastic gene expression has long relied on Markovian hypothesis. In recent years, however, this hypothesis is challenged by the increasing availability of time-resolved data. Correspondingly, there is considerable interest in understanding how non-Markovian reaction kinetics of gene expression impact protein variations across a population of genetically identical cells. Here, we analyze a stochastic model of gene expression with arbitrary waiting-time distributions, which includes existing gene models as its special cases. We find that stationary probabilistic behavior of this non-Markovian system is exactly the same as that of an equivalent Markovian system with the same substrates. Based on this fact, we derive analytical results, which provide insight into the roles of feedback regulation and molecular memory in controlling the protein noise and properties of the steady states, which are inaccessible via existing methodology. Our results also provide quantitative insight into diverse cellular processes involving stochastic sources of gene expression and molecular memory.

Identifiants

pubmed: 32575237
doi: 10.1103/PhysRevE.101.052406
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

052406

Auteurs

Zihao Wang (Z)

Guangdong Province Key Laboratory of Computational Science School of Mathematics, Sun Yat-sen University, Guangzhou 510275, China.

Zhenquan Zhang (Z)

Guangdong Province Key Laboratory of Computational Science School of Mathematics, Sun Yat-sen University, Guangzhou 510275, China.

Tianshou Zhou (T)

Guangdong Province Key Laboratory of Computational Science School of Mathematics, Sun Yat-sen University, Guangzhou 510275, China.

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Classifications MeSH