Sequencing and Analysis of the Sex Determination Region of
Populus
cytokinin response regulator
genome
inverted repeats
sex
Journal
Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097
Informations de publication
Date de publication:
24 07 2020
24 07 2020
Historique:
received:
01
07
2020
revised:
17
07
2020
accepted:
22
07
2020
entrez:
30
7
2020
pubmed:
30
7
2020
medline:
2
4
2021
Statut:
epublish
Résumé
The ages and sizes of a sex-determination region (SDR) are difficult to determine in non-model species. Due to the lack of recombination and enrichment of repetitive elements in SDRs, the quality of assembly with short sequencing reads is universally low. Unique features present in the SDRs help provide clues about how SDRs are established and how they evolve in the absence of recombination. Several
Identifiants
pubmed: 32722098
pii: genes11080843
doi: 10.3390/genes11080843
pmc: PMC7465354
pii:
doi:
Substances chimiques
DNA, Plant
0
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Références
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
PLoS Biol. 2018 Aug 27;16(8):e2006062
pubmed: 30148831
Am J Bot. 2016 Aug;103(8):1379-82
pubmed: 27370315
Nat Biotechnol. 2019 Aug;37(8):907-915
pubmed: 31375807
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
Nucleic Acids Res. 1999 Jan 15;27(2):573-80
pubmed: 9862982
Mol Ecol. 2015 Jul;24(13):3243-56
pubmed: 25728270
Plant Sci. 2018 Dec;277:68-78
pubmed: 30466602
Front Plant Sci. 2015 Dec 07;6:1030
pubmed: 26697024
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86
pubmed: 22110026
BMC Genomics. 2015 Jan 23;16:24
pubmed: 25613058
Br Foreign Med Chir Rev. 1860 Apr;25(50):367-404
pubmed: 30164232
Am J Bot. 2014 Oct;101(10):1588-96
pubmed: 25326608
Annu Rev Plant Biol. 2016 Apr 29;67:397-420
pubmed: 26653795
Nat Rev Genet. 2013 Feb;14(2):113-24
pubmed: 23329112
Bioinformatics. 2007 Nov 1;23(21):2947-8
pubmed: 17846036
Nucleic Acids Res. 2009 Nov;37(21):7002-13
pubmed: 19786494
Genome Biol. 2006;7 Suppl 1:S10.1-12
pubmed: 16925832
Nucleic Acids Res. 2012 Apr;40(7):e49
pubmed: 22217600
Genetics. 2008 Sep;180(1):329-40
pubmed: 18716330
Nat Genet. 2014 Oct;46(10):1089-96
pubmed: 25151358
Nat Rev Genet. 2014 Jun;15(6):394-408
pubmed: 24805120
Sci Rep. 2019 Jan 31;9(1):1045
pubmed: 30705300
Genome Biol. 2020 Feb 14;21(1):38
pubmed: 32059685
Mol Biol Evol. 2011 Oct;28(10):2731-9
pubmed: 21546353
Nat Plants. 2020 Jun;6(6):630-637
pubmed: 32483326
J Exp Bot. 2013 Jan;64(2):405-20
pubmed: 23125359
Heredity (Edinb). 2015 Jun;114(6):575-83
pubmed: 25649501
BMC Bioinformatics. 2008 Jan 14;9:18
pubmed: 18194517
Genome Res. 2017 May;27(5):722-736
pubmed: 28298431
Cell. 1988 Apr 8;53(1):127-36
pubmed: 3349525
Genome Res. 2008 Mar;18(3):422-30
pubmed: 18256239
Mol Genet Genomics. 2018 Dec;293(6):1437-1452
pubmed: 30022352
Plant Biol (Stuttg). 2015 Jan;17(1):256-61
pubmed: 24943351
Genome Biol. 2015 Jan 13;16:3
pubmed: 25583564
Sci Rep. 2015 Mar 13;5:9076
pubmed: 25766834
Am J Hum Genet. 2007 Sep;81(3):559-75
pubmed: 17701901
New Phytol. 2015 Oct;208(1):52-65
pubmed: 26053356
Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33
pubmed: 25431634
Curr Biol. 2011 Jan 25;21(2):R62-5
pubmed: 21256434
Biochimie. 2019 Jul;162:26-32
pubmed: 30935960
Hereditas. 2007 Jul;144(3):78-9
pubmed: 17663699
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
PLoS Biol. 2014 Jul 01;12(7):e1001899
pubmed: 24983465
Annu Rev Plant Biol. 2018 Apr 29;69:553-575
pubmed: 29719167