Adenosine Diphosphate Ribose
/ metabolism
Amino Acid Sequence
Apoproteins
/ chemistry
Betacoronavirus
/ metabolism
Carbon-13 Magnetic Resonance Spectroscopy
Nitrogen Isotopes
/ chemistry
Protein Domains
Protein Structure, Secondary
Proton Magnetic Resonance Spectroscopy
SARS-CoV-2
Viral Nonstructural Proteins
/ chemistry
COVID19-NMR
Macrodomain
Non-structural protein
Protein drugability
SARS-CoV-2
Solution NMR-spectroscopy
Journal
Biomolecular NMR assignments
ISSN: 1874-270X
Titre abrégé: Biomol NMR Assign
Pays: Netherlands
ID NLM: 101472371
Informations de publication
Date de publication:
10 2020
10 2020
Historique:
received:
13
07
2020
accepted:
31
07
2020
pubmed:
18
8
2020
medline:
17
9
2020
entrez:
18
8
2020
Statut:
ppublish
Résumé
The SARS-CoV-2 genome encodes for approximately 30 proteins. Within the international project COVID19-NMR, we distribute the spectroscopic analysis of the viral proteins and RNA. Here, we report NMR chemical shift assignments for the protein Nsp3b, a domain of Nsp3. The 217-kDa large Nsp3 protein contains multiple structurally independent, yet functionally related domains including the viral papain-like protease and Nsp3b, a macrodomain (MD). In general, the MDs of SARS-CoV and MERS-CoV were suggested to play a key role in viral replication by modulating the immune response of the host. The MDs are structurally conserved. They most likely remove ADP-ribose, a common posttranslational modification, from protein side chains. This de-ADP ribosylating function has potentially evolved to protect the virus from the anti-viral ADP-ribosylation catalyzed by poly-ADP-ribose polymerases (PARPs), which in turn are triggered by pathogen-associated sensing of the host immune system. This renders the SARS-CoV-2 Nsp3b a highly relevant drug target in the viral replication process. We here report the near-complete NMR backbone resonance assignment (
Identifiants
pubmed: 32803496
doi: 10.1007/s12104-020-09973-4
pii: 10.1007/s12104-020-09973-4
pmc: PMC7428200
doi:
Substances chimiques
Apoproteins
0
Nitrogen Isotopes
0
Nitrogen-15
0
Viral Nonstructural Proteins
0
Adenosine Diphosphate Ribose
20762-30-5
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
339-346Subventions
Organisme : Deutsche Forschungsgemeinschaft
ID : CRC 902
Pays : International
Organisme : Hessisches Ministerium für Wissenschaft und Kunst
ID : BMRZ
Pays : International
Organisme : Goethe-Universität Frankfurt am Main
ID : Goethe Corona Funds
Pays : International
Organisme : Italian Ministry for University and Research
ID : ERIC-INSTRUCT
Pays : International
Organisme : Reinforcement of the Research and Innovation Infrastructure
ID : MIS 5002550
Pays : International
Organisme : European Regional Development Fund
ID : EU FP7 REGPOT CT-2011-285950 - "SEE-DRUG"
Pays : International
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