Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations.


Journal

Communications biology
ISSN: 2399-3642
Titre abrégé: Commun Biol
Pays: England
ID NLM: 101719179

Informations de publication

Date de publication:
25 08 2020
Historique:
received: 31 08 2019
accepted: 16 07 2020
entrez: 27 8 2020
pubmed: 28 8 2020
medline: 17 6 2021
Statut: epublish

Résumé

Anatomically modern humans reached East Asia more than 40,000 years ago. However, key questions still remain unanswered with regard to the route(s) and the number of wave(s) in the dispersal into East Eurasia. Ancient genomes at the edge of the region may elucidate a more detailed picture of the peopling of East Eurasia. Here, we analyze the whole-genome sequence of a 2,500-year-old individual (IK002) from the main-island of Japan that is  characterized with a typical Jomon culture. The phylogenetic analyses support multiple waves of migration, with IK002 forming a basal lineage to the East and Northeast Asian genomes examined, likely representing some of the earliest-wave migrants who went north from Southeast Asia to East Asia. Furthermore, IK002 shows strong genetic affinity with the indigenous Taiwan aborigines, which may support a coastal route of the Jomon-ancestry migration. This study highlights the power of ancient genomics to provide new insights into the complex history of human migration into East Eurasia.

Identifiants

pubmed: 32843717
doi: 10.1038/s42003-020-01162-2
pii: 10.1038/s42003-020-01162-2
pmc: PMC7447786
doi:

Substances chimiques

DNA, Ancient 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

437

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Auteurs

Takashi Gakuhari (T)

Center for Cultural Resource Studies, College of Human and Social Sciences, Kanazawa University, Kanazawa, Japan.
Institute for Frontier Science Initiative, Kanazawa University, Kanazawa, Japan.
Kitasato University School of Medicine, Sagamihara, Japan.

Shigeki Nakagome (S)

School of Medicine, Trinity College Dublin, the University of Dublin, Dublin, Ireland.

Simon Rasmussen (S)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.

Morten E Allentoft (ME)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Trace and Environmental DNA (TrEnD) laboratory, School of Molecular and Life Sciences, Curtin University, Perth, WA, Australia.

Takehiro Sato (T)

Department of Bioinformatics and Genomics, Graduate School of Advanced Preventive Medical Sciences, Kanazawa University, Kanazawa, Japan.

Thorfinn Korneliussen (T)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.

Blánaid Ní Chuinneagáin (BN)

School of Medicine, Trinity College Dublin, the University of Dublin, Dublin, Ireland.

Hiromi Matsumae (H)

Kitasato University School of Medicine, Sagamihara, Japan.

Kae Koganebuchi (K)

Kitasato University School of Medicine, Sagamihara, Japan.

Ryan Schmidt (R)

Kitasato University School of Medicine, Sagamihara, Japan.

Souichiro Mizushima (S)

Department of Anatomy, St. Marianna University School of Medicine, Kawasaki, Japan.

Osamu Kondo (O)

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.

Nobuo Shigehara (N)

Nara National Research Institute for Cultural Properties, Nara, Japan.

Minoru Yoneda (M)

The University Museum, The University of Tokyo, Tokyo, Japan.

Ryosuke Kimura (R)

Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan.

Hajime Ishida (H)

Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan.

Tadayuki Masuyama (T)

Educational Committee of Tahara City, Tahara, Japan.

Yasuhiro Yamada (Y)

National Museum of Japanese History, Sakura, Japan.

Atsushi Tajima (A)

Department of Bioinformatics and Genomics, Graduate School of Advanced Preventive Medical Sciences, Kanazawa University, Kanazawa, Japan.

Hiroki Shibata (H)

Division of Genomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.

Atsushi Toyoda (A)

National Institute of Genetics, Mishima, Japan.

Toshiyuki Tsurumoto (T)

Department of Macroscopic Anatomy, Nagasaki University Graduate School of Biomedical Science, Nagasaki, Japan.

Tetsuaki Wakebe (T)

Department of Macroscopic Anatomy, Nagasaki University Graduate School of Biomedical Science, Nagasaki, Japan.

Hiromi Shitara (H)

Department of Archaeology, The University of Tokyo, Tokyo, Japan.

Tsunehiko Hanihara (T)

Kitasato University School of Medicine, Sagamihara, Japan.

Eske Willerslev (E)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
GeoGenetics Groups, Department of Zoology, University of Cambridge, Cambridge, UK.
Wellcome Trust Sanger Institute, Hinxton, UK.

Martin Sikora (M)

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark. martin.sikora@snm.ku.dk.

Hiroki Oota (H)

Kitasato University School of Medicine, Sagamihara, Japan. hiroki_oota@bs.s.u-tokyo.ac.jp.
Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. hiroki_oota@bs.s.u-tokyo.ac.jp.

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