Growth retardation-responsive analysis of mRNAs and long noncoding RNAs in the liver tissue of Leiqiong cattle.
Animals
Cattle
/ growth & development
Cattle Diseases
/ metabolism
Gene Expression Regulation, Developmental
Growth Disorders
/ metabolism
Liver
/ metabolism
RNA, Long Noncoding
/ metabolism
RNA, Messenger
/ metabolism
Real-Time Polymerase Chain Reaction
/ veterinary
Sequence Analysis, RNA
/ veterinary
Transcriptome
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
31 08 2020
31 08 2020
Historique:
received:
02
04
2020
accepted:
10
08
2020
entrez:
2
9
2020
pubmed:
2
9
2020
medline:
23
2
2021
Statut:
epublish
Résumé
As an important type of non-coding RNA molecule, long non-coding RNAs (lncRNAs) have varied roles in many biological processes, and have been studied extensively over the past few years. However, little is known about lncRNA-mediated regulation during cattle growth and development. Therefore, in the present study, RNA sequencing was used to determine the expression level of mRNAs and lncRNAs in the liver of adult Leiqiong cattle under the condition of growth retardation and normal growth. We totally detected 1,124 and 24 differentially expressed mRNAs and lncRNAs, respectively. The differentially expressed mRNAs were mainly associated with growth factor binding, protein K63-linked ubiquitination and cellular protein metabolic process; additionally, they were significantly enriched in the growth and development related pathways, including PPAR signaling pathway, vitamin B6 metabolism, glyoxylate and dicarboxylate metabolism. Combined analysis showed that the co-located differentially expressed lncRNA Lnc_002583 might positively influence the expression of the corresponding genes IFI44 and IFI44L, exerting co-regulative effects on Leiqiong cattle growth and development. Thus, we made the hypothesis that Lnc_002583, IFI44 and IFI44L might function synergistically to regulate the growth of Leiqiong cattle. This study provides a catalog of Leiqiong cattle liver mRNAs and lncRNAs, and will contribute to a better understanding of the molecular mechanism underlying growth regulataion.
Identifiants
pubmed: 32868811
doi: 10.1038/s41598-020-71206-4
pii: 10.1038/s41598-020-71206-4
pmc: PMC7459292
doi:
Substances chimiques
RNA, Long Noncoding
0
RNA, Messenger
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
14254Références
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