Genome resequencing data for Iranian local dogs and wolves.
Canid
Iran
Whole-genome resequencing
Journal
BMC research notes
ISSN: 1756-0500
Titre abrégé: BMC Res Notes
Pays: England
ID NLM: 101462768
Informations de publication
Date de publication:
16 Sep 2020
16 Sep 2020
Historique:
received:
02
04
2020
accepted:
04
09
2020
entrez:
17
9
2020
pubmed:
18
9
2020
medline:
15
5
2021
Statut:
epublish
Résumé
The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting subject in genome biology. Dog is an excellent model for understanding of domestication due to its considerable variety of behavioral and physical traits. The Zagros area of current day Iran has been identified as one of the initial centers of animal domestication. The availability of the complete genome sequences of Iranian local canids can be a valuable resource for researchers to address questions and testing hypotheses on the dog domestication process. We collected blood samples from six Iranian local canids including two hunting dogs (Saluki breed), a mastiff dog (Qahderijani ecotype) and three wolves. We extracted genomic DNA from blood samples. Sequence data were produced using the Illumina HiSeq 2500 system. All sequence data are available in the National Genomics Data Center (NGDC), Genome Sequence Archive (GSA) database under the accession of CRA001324 and the National Center for Biotechnology Information (NCBI) under the accession of PRJNA639312. The short-read sequences with the mean depth of 16X were aligned to the dog reference genome (CanFam3.1) and achieved 99% coverage of the reference assembly. The obtained information from this experiment will be useful in evolutionary biology.
Identifiants
pubmed: 32938490
doi: 10.1186/s13104-020-05271-3
pii: 10.1186/s13104-020-05271-3
pmc: PMC7493879
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
436Subventions
Organisme : Chinese Academy of Sciences President's International Fellowship Initiative
ID : 2016VBA050
Organisme : the National Natural Science Foundation of China
ID : 91531303
Organisme : International Cooperation Program of Bureau of International Cooperation of Chinese Academy of Sciences
ID : GJHZ1559
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