Forensic application and genetic diversity of 21 autosomal STR loci in five major population groups of Pakistan.
Autosomal STRs
Forensic genetics
GlobalFiler™
Pakistan
Population genetics
Journal
International journal of legal medicine
ISSN: 1437-1596
Titre abrégé: Int J Legal Med
Pays: Germany
ID NLM: 9101456
Informations de publication
Date de publication:
May 2021
May 2021
Historique:
received:
12
05
2020
accepted:
03
08
2020
pubmed:
27
9
2020
medline:
29
6
2021
entrez:
26
9
2020
Statut:
ppublish
Résumé
Investigation of genetic diversity of the 21 autosomal STR loci included in the GlobalFilerTM PCR Amplification Kit in 529 Pakistani individuals belonging to the Punjabi, Pashtun, Sindhi, Saraiki, and Baloch ethnic groups. Population genetic parameters and forensic informative metrics for each group were evaluated. SE33 showed the greatest power of discrimination in all populations studied. The combined match probability ranged from 8.06E-27 (Saraiki) to 1.05E-26 (Baloch), and the combined power of exclusion ranged from 0.99999999902 (Punjabi) to 0.99999999964 (Pashtun). D12S391 in the Baloch population and D2S441 in the Saraiki population showed deviation from Hardy-Weinberg equilibrium. Significant genetic distances were observed between the Punjabi, Pashtun, and Baloch populations. This study supports the utilization of the GlobalFilerTM STR kit for forensic applications in Pakistan.
Identifiants
pubmed: 32979087
doi: 10.1007/s00414-020-02393-y
pii: 10.1007/s00414-020-02393-y
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
775-777Subventions
Organisme : University of the Punjab
ID : 2017D-1829-Est-I
Références
Qamar R, Ayub Q, Khaliq S, Mansoor A, Karafet T, Mehdi SQ, Hammer MF (1999) African and Levantine origins of Pakistani YAP+ Y chromosomes. Hum Biol 71:745–755
pubmed: 10510568
Hussain R (2005) The effect of religious, cultural and social identity on population genetic structure among Muslims in Pakistan. Ann Hum Biol 32:145–153. https://doi.org/10.1080/03014460500075167
doi: 10.1080/03014460500075167
pubmed: 16096210
Mehdi SQ, Qamar R, Ayub Q, Khaliq S, Mansoor A, Ismail M, Hammer MF, Underhill PA, Cavalli-Sforza LL (1999) The origins of Pakistani populations. In: Papiha SS, Deka R, Chakraborty R (eds) Genomic diversity: applications in human population genetics. Springer US, Boston, MA, pp 83–90
doi: 10.1007/978-1-4615-4263-6_7
Giosan L, Clift PD, Macklin MG, Fuller DQ, Constantinescu S, Durcan JA, Stevens T, Duller GAT, Tabrez AR, Gangal K, Adhikari R, Alizai A, Filip F, VanLaningham S, Syvitski JPM (2012) Fluvial landscapes of the Harappan civilization. Proc Natl Acad Sci U S A 109:E1688–E1694. https://doi.org/10.1073/pnas.1112743109
doi: 10.1073/pnas.1112743109
pubmed: 22645375
pmcid: 3387054
Recchia GL, Louwerse MM (2016) Archaeology through computational linguistics: inscription statistics predict excavation sites of Indus Valley artifacts. Cogn Sci 40:2065–2080. https://doi.org/10.1111/cogs.12311
doi: 10.1111/cogs.12311
pubmed: 26467321
Pakistan Bureau of Statistics - 6th Population and Housing Census. www.pbscensus.gov.pk . Arch. from Orig. 15 Oct. 2017. Retrieved 24 December 2018
Grimes BF (1992) Ethnologue: languages of the world, 12th edn. Sumner Institute of Linguistics, Inc
2017 Census. Arch. 15 Oct. 2017 Wayback Mach
Minahan JB (2012) Ethnic groups of South Asia and the Pacific: An Encyclopedia. ABC-CLIO
Elfenbein J (1998) BALUCHISTAN iii. Baluchi Language and Literature. Encyclopedia Iranica
Ansari SASA (1901) A short sketch, historical and traditional, of the Musalman races found in Sind, Baluchistan and Afghanistan. Printed at the Commissioner's Press ii, Karachi , p 2
Burton RF (1851) Sindh, and the races that inhabit the valley of the Indus. WH Aleen & Co. Ltd, London
U.S. Department of State (2011) Background notes: South Asia, may, 2011. InfoStrategist.com . ISBN 978-1592431298
Pakistan population: 199,085,847 (July 2015 est.) [Pashtun (Pathan) 15.42%] = 30,699,037. The World Factbook. Central Intelligence Agency (CIA). Retrieved 10 February 2012
Kampmann M-L, Buchard A, Borsting C, Morling N (2016) High-throughput sequencing of forensic genetic samples using punches of FTA cards with buccal swabs. Biotechniques 61:149–151. https://doi.org/10.2144/000114453
doi: 10.2144/000114453
pubmed: 27625209
Wang DY, Gopinath S, Lagacé RE, Norona W, Hennessy LK, Short ML, Mulero JJ (2015) Developmental validation of the GlobalFiler ® express PCR amplification kit: a 6-dye multiplex assay for the direct amplification of reference samples. Forensic Sci Int Genet 19:148–155. https://doi.org/10.1016/j.fsigen.2015.07.013
doi: 10.1016/j.fsigen.2015.07.013
pubmed: 26226223
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x
doi: 10.1111/j.1755-0998.2010.02847.x
pubmed: 21565059
Brenner CH (1997) Symbolic kinship program. Genetics 145:535–542
doi: 10.1093/genetics/145.2.535
Takezaki N, Nei M, Tamura K (2010) POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol Biol Evol 27:747–752
doi: 10.1093/molbev/msp312
Venables WN, Ripley BD (2002) Modern applied statistics with S, fourth edition. Springer, New York
doi: 10.1007/978-0-387-21706-2
RStudio Team (2015) RStudio: integrated development for R. RStudio, Inc., Boston http://www.rstudio.com