Solution structure and RNA-binding of a minimal ProQ-homolog from


Journal

RNA (New York, N.Y.)
ISSN: 1469-9001
Titre abrégé: RNA
Pays: United States
ID NLM: 9509184

Informations de publication

Date de publication:
12 2020
Historique:
received: 21 07 2020
accepted: 23 09 2020
pubmed: 30 9 2020
medline: 26 1 2021
entrez: 29 9 2020
Statut: ppublish

Résumé

Small regulatory RNAs (sRNAs) play an important role for posttranscriptional gene regulation in bacteria. sRNAs recognize their target messenger RNAs (mRNAs) by base-pairing, which is often facilitated by interactions with the bacterial RNA-binding proteins Hfq or ProQ. The FinO/ProQ RNA-binding protein domain was first discovered in the bacterial repressor of conjugation, FinO. Since then, the functional role of FinO/ProQ-like proteins in posttranscriptional gene regulation was extensively studied in particular in the enterobacteria

Identifiants

pubmed: 32989045
pii: rna.077354.120
doi: 10.1261/rna.077354.120
pmc: PMC7668265
doi:

Substances chimiques

Bacterial Proteins 0
RNA, Bacterial 0
RNA-Binding Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2031-2043

Informations de copyright

© 2020 Immer et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Références

Nucleic Acids Res. 2003 Jul 15;31(14):4091-8
pubmed: 12853626
Methods Enzymol. 1989;177:44-73
pubmed: 2691846
Eur Biophys J. 2009 Feb;38(2):129-43
pubmed: 18807026
Nucleic Acids Res. 2011 May;39(10):4450-63
pubmed: 21278162
Mol Cell. 2018 Jun 7;70(5):971-982.e6
pubmed: 29804828
Adv Protein Chem. 2003;66:27-85
pubmed: 14631816
RNA. 2017 May;23(5):696-711
pubmed: 28193673
Mol Cell. 2020 Jan 16;77(2):411-425.e7
pubmed: 31761494
J Biomol NMR. 1996 Sep;8(2):136-46
pubmed: 8914272
Proteins. 2005 Jun 1;59(4):687-96
pubmed: 15815974
Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11591-11596
pubmed: 27671629
Annu Rev Biophys. 2017 May 22;46:131-148
pubmed: 28532217
Angew Chem Int Ed Engl. 2016 Jan 22;55(4):1527-30
pubmed: 26661511
J Biol Chem. 1999 Apr 9;274(15):10356-62
pubmed: 10187824
Nucleic Acids Res. 2017 Jun 2;45(10):6147-6167
pubmed: 28334889
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W665-7
pubmed: 15215472
Chembiochem. 2003 Oct 6;4(10):936-62
pubmed: 14523911
EMBO J. 2002 Jul 1;21(13):3546-56
pubmed: 12093755
Elife. 2014 Dec 31;3:
pubmed: 25551292
J Bacteriol. 1999 Mar;181(5):1537-43
pubmed: 10049386
Biochemistry. 2011 Apr 19;50(15):3095-106
pubmed: 21381725
Cell. 1997 Jul 11;90(1):43-53
pubmed: 9230301
Mol Microbiol. 2017 Jun;104(6):905-915
pubmed: 28370625
Curr Opin Microbiol. 2016 Apr;30:133-138
pubmed: 26907610
Nucleic Acids Res. 2012 Feb;40(4):1856-67
pubmed: 22053080
BMC Biotechnol. 2008 Dec 04;8:91
pubmed: 19055817
Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18613-18618
pubmed: 31455740
EMBO J. 2003 Dec 1;22(23):6346-55
pubmed: 14633993
Biomol NMR Assign. 2018 Oct;12(2):319-322
pubmed: 29934867
Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8813-8
pubmed: 27432973
Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4620-5
pubmed: 11917098
EMBO J. 2016 May 2;35(9):991-1011
pubmed: 27044921
mBio. 2019 Jan 2;10(1):
pubmed: 30602583
Trends Biochem Sci. 2013 Nov;38(11):546-55
pubmed: 24035451
RNA Biol. 2010 Nov-Dec;7(6):812-9
pubmed: 21045552
J Biomol NMR. 2013 Jul;56(3):227-41
pubmed: 23728592
Nucleic Acids Res. 2013 Aug;41(15):7536-46
pubmed: 23771143
Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10037-41
pubmed: 11517324
J Biomol NMR. 1998 Jul;12(1):1-23
pubmed: 9729785
mSystems. 2019 Dec 3;4(6):
pubmed: 31796567
Nucleic Acids Res. 2020 Jul 27;48(13):7502-7519
pubmed: 32542384
J Biol Chem. 2012 Oct 12;287(42):35286-98
pubmed: 22904324
Nat Struct Biol. 2000 Jul;7(7):565-9
pubmed: 10876242
Biochemistry. 1994 May 17;33(19):5984-6003
pubmed: 7514039
J Biomol NMR. 2011 Jan;49(1):9-15
pubmed: 21190063
Nucleic Acids Res. 2020 May 7;48(8):4507-4520
pubmed: 32170306
RNA. 2002 Jun;8(6):816-23
pubmed: 12088153
Nat Struct Mol Biol. 2004 Dec;11(12):1206-14
pubmed: 15531892
RNA. 2020 Oct;26(10):1448-1463
pubmed: 32646969
Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19292-7
pubmed: 19889981
EMBO J. 2017 Apr 13;36(8):1029-1045
pubmed: 28336682
Nat Rev Mol Cell Biol. 2017 Apr;18(4):215-228
pubmed: 28196981
J Biol Chem. 2015 Nov 27;290(48):28869-86
pubmed: 26459561
J Biomol NMR. 2002 Nov;24(3):171-89
pubmed: 12522306
Mol Microbiol. 1994 Nov;14(3):427-36
pubmed: 7533880
Nat Commun. 2020 Jun 4;11(1):2823
pubmed: 32499480
Proteins. 2007 Mar 1;66(4):778-95
pubmed: 17186527

Auteurs

Carina Immer (C)

Institute of Molecular Biosciences and Center for Biomolecular Magnetic Resonance (BMRZ), Johann-Wolfgang-Goethe-University, Frankfurt 60438, Germany.

Carolin Hacker (C)

Institute of Molecular Biosciences and Center for Biomolecular Magnetic Resonance (BMRZ), Johann-Wolfgang-Goethe-University, Frankfurt 60438, Germany.

Jens Wöhnert (J)

Institute of Molecular Biosciences and Center for Biomolecular Magnetic Resonance (BMRZ), Johann-Wolfgang-Goethe-University, Frankfurt 60438, Germany.

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