Chicken Astrovirus (CAstV) Molecular Studies Reveal Evidence of Multiple Past Recombination Events in Sequences Originated from Clinical Samples of White Chick Syndrome (WCS) in Western Canada.
chicken astrovirus
molecular epidemiology
recombination
runting-stunting syndrome
white chick syndrome
whole genome sequencing
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
28 09 2020
28 09 2020
Historique:
received:
12
09
2020
revised:
22
09
2020
accepted:
25
09
2020
entrez:
1
10
2020
pubmed:
2
10
2020
medline:
9
3
2021
Statut:
epublish
Résumé
In this study, we aimed to molecularly characterize 14 whole genome sequences of chicken astrovirus (CAstV) isolated from samples obtained from white chick syndrome (WCS) outbreaks in Western Canada during the period of 2014-2019. Genome sequence comparisons showed all these sequences correspond to the novel Biv group from which no confirmed representatives were published in GenBank. Molecular recombination analyses using recombination detection software (i.e., RDP5 and SimPlot) and phylogenetic analyses suggest multiple past recombination events in open reading frame (ORF)1a, ORF1b, and ORF2. Our findings suggest that recombination events and the accumulation of point mutations may have contributed to the substantial genetic variation observed in CAstV and evidenced by the current seven antigenic sub-clusters hitherto described. This is the first paper that describes recombination events in CAstV following analysis of complete CAstV sequences originated in Canada.
Identifiants
pubmed: 32998356
pii: v12101096
doi: 10.3390/v12101096
pmc: PMC7600043
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
Arch Virol. 2019 Sep;164(9):2417-2429
pubmed: 31187277
Pathogens. 2017 Oct 24;6(4):
pubmed: 29064408
Annu Rev Virol. 2017 Sep 29;4(1):327-348
pubmed: 28715976
Avian Pathol. 1979 Jul;8(3):239-47
pubmed: 18770449
Avian Pathol. 2000 Jun;29(3):195-206
pubmed: 19184805
Viruses. 2017 Jan 19;9(1):
pubmed: 28106836
J Virol. 2010 Apr;84(7):3134-46
pubmed: 19906932
AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102
pubmed: 15665649
Virology. 2018 Sep;522:138-146
pubmed: 30029013
Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13757-62
pubmed: 11717435
J Virol. 2008 May;82(10):5099-103
pubmed: 18321976
Genetics. 2002 Dec;162(4):1505-11
pubmed: 12524327
Avian Dis. 2006 Sep;50(3):397-404
pubmed: 17039840
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66
pubmed: 12136088
Bioinformatics. 2000 Jun;16(6):562-3
pubmed: 10980155
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
J Virol. 2016 Sep 29;90(20):9008-17
pubmed: 27466429
Nat Commun. 2019 Feb 25;10(1):934
pubmed: 30804347
Avian Dis. 2008 Jun;52(2):235-44
pubmed: 18646452
Avian Pathol. 2004 Jun;33(3):364-70
pubmed: 15223568
Avian Dis. 2018 Jun;62(2):247-258
pubmed: 29944402
Avian Dis. 2017 Sep;61(3):402-408
pubmed: 28956997
Avian Pathol. 2015;44(6):436-42
pubmed: 26286674
Avian Pathol. 1989 Apr;18(2):239-53
pubmed: 18679857
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Virology. 1999 Dec 20;265(2):218-25
pubmed: 10600594
Avian Pathol. 1990 Jan;19(1):75-87
pubmed: 18679916
Vet Res Commun. 2017 Mar;41(1):67-75
pubmed: 28012117
Virus Evol. 2015 May 26;1(1):vev003
pubmed: 27774277
J Clin Microbiol. 2012 Nov;50(11):3760-4
pubmed: 22933603
J Virol. 2006 Nov;80(22):11124-40
pubmed: 16956935
J Virol. 1999 Jan;73(1):152-60
pubmed: 9847317
Viruses. 2019 Nov 13;11(11):
pubmed: 31766215
Arch Virol. 2014 Dec;159(12):3185-96
pubmed: 25326755
Syst Biol. 2012 Jul;61(4):691-701
pubmed: 22215721
J Gen Virol. 2018 Apr;99(4):512-524
pubmed: 29458661
Mol Biol Evol. 2018 Jan 1;35(1):247-251
pubmed: 29029186
Avian Pathol. 1994 Jun;23(2):313-27
pubmed: 18671096
Trends Ecol Evol. 2000 Dec 1;15(12):489-490
pubmed: 11114432
Avian Pathol. 2010 Dec;39(6):467-74
pubmed: 21154056
Science. 2012 Jul 13;337(6091):188
pubmed: 22798607
Vaccine. 2008 Mar 4;26(10):1274-84
pubmed: 18262691
J Mol Biol. 2012 Oct 5;422(5):650-658
pubmed: 22743104
J Gen Virol. 1999 Oct;80 ( Pt 10):2535-2543
pubmed: 10573145
Vet Microbiol. 2014 May 14;170(1-2):39-47
pubmed: 24560589
Avian Pathol. 2013;42(5):464-73
pubmed: 24015918
PLoS Biol. 2018 Aug 13;16(8):e3000003
pubmed: 30102691
Virus Res. 2020 Mar;278:197858
pubmed: 31904408
Vet Rec. 1984 Mar 3;114(9):216-8
pubmed: 6328734
J Virol. 1999 Sep;73(9):7607-18
pubmed: 10438851
Viruses. 2017 Feb 10;9(2):
pubmed: 28208602
Avian Pathol. 2016;45(1):2-12
pubmed: 26514927
J Virol. 2010 Oct;84(19):9733-48
pubmed: 20660197
J Gen Virol. 2000 Jan;81(Pt 1):243-55
pubmed: 10640564
Vet Rec. 2013 Oct 26;173(16):403-4
pubmed: 24163046
Vet Rec. 1980 Jun 28;106(26):561
pubmed: 6776680
Arch Virol. 2016 Sep;161(9):2581-7
pubmed: 27339687
Bioinformatics. 2000 Jul;16(7):573-82
pubmed: 11038328
Arch Virol. 2012 Jul;157(7):1329-37
pubmed: 22527867
Avian Pathol. 2012;41(2):151-9
pubmed: 22515534
J Mol Evol. 1992 Feb;34(2):126-9
pubmed: 1556748
Infect Genet Evol. 2012 Mar;12(2):435-42
pubmed: 22326537
Cell Mol Life Sci. 2016 Dec;73(23):4433-4448
pubmed: 27392606