Secondary metabolites from plant-associated Pseudomonas are overproduced in biofilm.


Journal

Microbial biotechnology
ISSN: 1751-7915
Titre abrégé: Microb Biotechnol
Pays: United States
ID NLM: 101316335

Informations de publication

Date de publication:
09 2020
Historique:
received: 29 12 2019
revised: 29 04 2020
accepted: 30 04 2020
entrez: 1 10 2020
pubmed: 2 10 2020
medline: 15 5 2021
Statut: ppublish

Résumé

Plant rhizosphere soil houses complex microbial communities in which microorganisms are often involved in intraspecies as well as interspecies and inter-kingdom signalling networks. Some members of these networks can improve plant health thanks to an important diversity of bioactive secondary metabolites. In this competitive environment, the ability to form biofilms may provide major advantages to microorganisms. With the aim of highlighting the impact of bacterial lifestyle on secondary metabolites production, we performed a metabolomic analysis on four fluorescent Pseudomonas strains cultivated in planktonic and biofilm colony conditions. The untargeted metabolomic analysis led to the detection of hundreds of secondary metabolites in culture extracts. Comparison between biofilm and planktonic conditions showed that bacterial lifestyle is a key factor influencing Pseudomonas metabolome. More than 50% of the detected metabolites were differentially produced according to planktonic or biofilm lifestyles, with the four Pseudomonas strains overproducing several secondary metabolites in biofilm conditions. In parallel, metabolomic analysis associated with genomic prediction and a molecular networking approach enabled us to evaluate the impact of bacterial lifestyle on chemically identified secondary metabolites, more precisely involved in microbial interactions and plant-growth promotion. Notably, this work highlights the major effect of biofilm lifestyle on acyl-homoserine lactone and phenazine production in P. chlororaphis strains.

Identifiants

pubmed: 33000552
doi: 10.1111/1751-7915.13598
pmc: PMC7415375
doi:

Substances chimiques

Acyl-Butyrolactones 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1562-1580

Informations de copyright

© 2020 The Authors. Microbial Biotechnology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Références

Anal Chem. 2006 Feb 1;78(3):779-87
pubmed: 16448051
J Lab Clin Med. 1954 Aug;44(2):301-7
pubmed: 13184240
Appl Microbiol Biotechnol. 1999 Oct;52(4):455-63
pubmed: 10570792
Front Plant Sci. 2016 Aug 25;7:1212
pubmed: 27610110
Microbes Environ. 2017 Mar 31;32(1):47-53
pubmed: 28239068
Annu Rev Microbiol. 2007;61:401-22
pubmed: 17506679
Antonie Van Leeuwenhoek. 2013 Mar;103(3):683-91
pubmed: 23111785
Nucleic Acids Res. 2017 Jul 3;45(W1):W36-W41
pubmed: 28460038
Plant Cell Environ. 2020 Jan;43(1):246-260
pubmed: 31509886
Metabolomics. 2016;12:75
pubmed: 27013931
Lett Appl Microbiol. 2009 May;48(5):505-12
pubmed: 19291210
J Bacteriol. 2008 Apr;190(8):2759-66
pubmed: 18263718
Plant Mol Biol. 2016 Apr;90(6):605-12
pubmed: 26898296
Plant Pathol J. 2018 Feb;34(1):44-58
pubmed: 29422787
J Bacteriol. 1951 Sep;62(3):293-300
pubmed: 14888646
Annu Rev Microbiol. 2002;56:187-209
pubmed: 12142477
Curr Opin Microbiol. 2004 Dec;7(6):602-9
pubmed: 15556032
J Bacteriol. 1999 Oct;181(19):5993-6002
pubmed: 10498711
Genome Biol. 2009;10(5):R51
pubmed: 19432983
Genome Announc. 2014 Feb 20;2(1):
pubmed: 24558233
Microbiology (Reading). 2000 Oct;146 ( Pt 10):2469-2480
pubmed: 11021923
Biofouling. 2018 Feb;34(2):132-148
pubmed: 29319346
Bioinformatics. 2005 Apr 1;21(7):1280-1
pubmed: 15546938
Microbiology (Reading). 2007 Oct;153(Pt 10):3608-3622
pubmed: 17906157
Mol Microbiol. 2016 Feb;99(3):557-70
pubmed: 26483285
Appl Environ Microbiol. 2001 Sep;67(9):4305-15
pubmed: 11526037
PLoS Genet. 2012 Jul;8(7):e1002784
pubmed: 22792073
Trends Plant Sci. 2016 Mar;21(3):187-198
pubmed: 26832945
Trends Plant Sci. 2016 Mar;21(3):169-170
pubmed: 26853595
FEMS Microbiol Rev. 2010 Jul;34(4):426-44
pubmed: 20070374
Appl Environ Microbiol. 1999 Jun;65(6):2429-38
pubmed: 10347023
Environ Sci Pollut Res Int. 2018 Oct;25(30):29953-29970
pubmed: 29313197
FEMS Microbiol Ecol. 2010 Jan;71(1):73-83
pubmed: 19889032
BMC Genomics. 2013 Jan 25;14:54
pubmed: 23350846
Front Microbiol. 2017 Jun 30;8:1218
pubmed: 28713346
Curr Med Chem. 2013;20(8):1056-90
pubmed: 23210790
Mol Plant Microbe Interact. 2011 Feb;24(2):271-84
pubmed: 21043573
Microbiology (Reading). 2005 Sep;151(Pt 9):3071-3080
pubmed: 16151217
Environ Microbiol. 2013 Mar;15(3):675-86
pubmed: 22882648
Bioinformatics. 2015 May 1;31(9):1493-5
pubmed: 25527831
Appl Environ Microbiol. 1992 Aug;58(8):2616-24
pubmed: 1514808
Phytopathology. 2014 Dec;104(12):1289-97
pubmed: 24941327
Environ Sci Pollut Res Int. 2018 Oct;25(30):29910-29920
pubmed: 29063401
Metabolomics. 2016;12:93
pubmed: 27123000
Anal Chem. 2012 Jan 3;84(1):283-9
pubmed: 22111785
J Biol Chem. 2018 May 25;293(21):7930-7941
pubmed: 29602905
Mol Microbiol. 2012 Oct;86(1):172-86
pubmed: 22925161
Mass Spectrom Rev. 2007 Jan-Feb;26(1):51-78
pubmed: 16921475
Front Microbiol. 2018 May 03;9:853
pubmed: 29774013
Microb Biotechnol. 2017 Jul;10(4):719-734
pubmed: 28205337
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46
pubmed: 21672958
J Bacteriol. 2007 Mar;189(6):2411-6
pubmed: 17220232
Microb Ecol. 2006 Aug;52(2):289-301
pubmed: 16897305
Nat Rev Microbiol. 2016 Aug 11;14(9):563-75
pubmed: 27510863
J Nat Prod. 2019 Feb 22;82(2):330-340
pubmed: 30681849
Appl Environ Microbiol. 2008 Mar;74(5):1339-49
pubmed: 18165366
J Bacteriol. 2005 Sep;187(18):6571-6
pubmed: 16159792
Biodegradation. 2003 Apr;14(2):65-72
pubmed: 12877462
Appl Environ Microbiol. 2006 May;72(5):3119-29
pubmed: 16672449
Environ Microbiol. 2000 Oct;2(5):530-41
pubmed: 11233161
J Biosci Bioeng. 2013 Nov;116(5):580-4
pubmed: 23727350
Nucleic Acids Res. 2017 Jan 4;45(D1):D517-D528
pubmed: 27899624
Biometals. 2002 Jun;15(2):103-20
pubmed: 12046919
Nat Rev Microbiol. 2006 Apr;4(4):249-58
pubmed: 16501584
Front Plant Sci. 2013 Sep 17;4:356
pubmed: 24062756
Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1743-52
pubmed: 22586093
Nat Prod Rep. 2009 Nov;26(11):1408-46
pubmed: 19844639
Mol Plant Microbe Interact. 2008 Oct;21(10):1349-58
pubmed: 18785830
Anal Chem. 2018 Dec 4;90(23):13900-13908
pubmed: 30335965
J Proteome Res. 2017 May 5;16(5):1962-1975
pubmed: 28362105
Nat Chem Biol. 2006 Feb;2(2):71-8
pubmed: 16421586
Bioinformatics. 2008 Nov 1;24(21):2534-6
pubmed: 18606607
Anal Chem. 2007 Nov 1;79(21):8037-45
pubmed: 17915964
Appl Environ Microbiol. 1992 Jan;58(1):353-8
pubmed: 16348633

Auteurs

Laura Rieusset (L)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Marjolaine Rey (M)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Daniel Muller (D)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Jordan Vacheron (J)

Department of Fundamental Microbiology, University of Lausanne, Lausanne, 1015, Switzerland.

Florence Gerin (F)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Audrey Dubost (A)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Gilles Comte (G)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Claire Prigent-Combaret (C)

CNRS UMR-5557, INRAe UMR-1418, Ecologie Microbienne, VetAgroSup, Université de Lyon, Université Claude Bernard Lyon1, 43 Boulevard du 11 novembre 1918, Villeurbanne, 69622, France.

Articles similaires

Populus Soil Microbiology Soil Microbiota Fungi
Aerosols Humans Decontamination Air Microbiology Masks
Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Semiconductors Photosynthesis Polymers Carbon Dioxide Bacteria

Classifications MeSH