SARS-CoV-2 outbreak investigation in a German meat processing plant.


Journal

EMBO molecular medicine
ISSN: 1757-4684
Titre abrégé: EMBO Mol Med
Pays: England
ID NLM: 101487380

Informations de publication

Date de publication:
07 12 2020
Historique:
received: 15 08 2020
revised: 23 09 2020
accepted: 25 09 2020
pubmed: 5 10 2020
medline: 17 12 2020
entrez: 4 10 2020
Statut: ppublish

Résumé

We describe a multifactorial investigation of a SARS-CoV-2 outbreak in a large meat processing complex in Germany. Infection event timing, spatial, climate and ventilation conditions in the processing plant, sharing of living quarters and transport, and viral genome sequences were analyzed. Our results suggest that a single index case transmitted SARS-CoV-2 to co-workers over distances of more than 8 m, within a confined work area in which air is constantly recirculated and cooled. Viral genome sequencing shows that all cases share a set of mutations representing a novel sub-branch in the SARS-CoV-2 C20 clade. We identified the same set of mutations in samples collected in the time period between this initial infection cluster and a subsequent outbreak within the same factory, with the largest number of confirmed SARS-CoV-2 cases in a German meat processing facility reported so far. Our results indicate climate conditions, fresh air exchange rates, and airflow as factors that can promote efficient spread of SARS-CoV-2 via long distances and provide insights into possible requirements for pandemic mitigation strategies in industrial workplace settings.

Identifiants

pubmed: 33012091
doi: 10.15252/emmm.202013296
pmc: PMC7646008
doi:

Substances chimiques

RNA, Viral 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e13296

Subventions

Organisme : SMART BIOTECS Alliance
Pays : International
Organisme : Helmholtz Association ()
ID : W2/W3-090
Pays : International
Organisme : Federal Ministry of Health (Germany)
ID : HPI-COVID-19
Pays : International

Informations de copyright

© 2020 The Authors Published under the terms of the CC BY 4.0 license.

Références

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Auteurs

Thomas Günther (T)

Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany.

Manja Czech-Sioli (M)

Institute for Medical Microbiology, Virology and Hygiene, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Daniela Indenbirken (D)

Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany.

Alexis Robitaille (A)

Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany.

Peter Tenhaken (P)

Health Office, Osnabrück, Germany.

Martin Exner (M)

Institute of Hygiene and Public Health, University of Bonn, Bonn, Germany.

Matthias Ottinger (M)

Omikron Systems GmbH, Braunschweig, Germany.

Nicole Fischer (N)

Institute for Medical Microbiology, Virology and Hygiene, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Adam Grundhoff (A)

Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany.

Melanie M Brinkmann (MM)

Viral Immune Modulation Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Institute of Genetics, Technische Universität Braunschweig, Braunschweig, Germany.

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Classifications MeSH