Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures.

Lipids / chemistry Mass Spectrometry Terminology as Topic
fatty acyls glycerolipids glycerophospholipids lipidomics mass spectrometry sphingolipids sterols

Journal

Journal of lipid research
ISSN: 1539-7262
Titre abrégé: J Lipid Res
Pays: United States
ID NLM: 0376606

Informations de publication

Date de publication:
12 2020
Historique:
pubmed: 11 10 2020
medline: 26 10 2021
entrez: 10 10 2020
Statut: ppublish

Résumé

A comprehensive and standardized system to report lipid structures analyzed by MS is essential for the communication and storage of lipidomics data. Herein, an update on both the LIPID MAPS classification system and shorthand notation of lipid structures is presented for lipid categories Fatty Acyls (FA), Glycerolipids (GL), Glycerophospholipids (GP), Sphingolipids (SP), and Sterols (ST). With its major changes, i.e., annotation of ring double bond equivalents and number of oxygens, the updated shorthand notation facilitates reporting of newly delineated oxygenated lipid species as well. For standardized reporting in lipidomics, the hierarchical architecture of shorthand notation reflects the diverse structural resolution powers provided by mass spectrometric assays. Moreover, shorthand notation is expanded beyond mammalian phyla to lipids from plant and yeast phyla. Finally, annotation of atoms is included for the use of stable isotope-labeled compounds in metabolic labeling experiments or as internal standards. This update on lipid classification, nomenclature, and shorthand annotation for lipid mass spectra is considered a standard for lipid data presentation.

Identifiants

DOI: 10.1194/jlr.S120001025 PMID: 33037133 PMC: PMC7707175
pubmed: 33037133
pii: S0022-2275(20)60017-7
doi: 10.1194/jlr.S120001025
pmc: PMC7707175
pii:
doi:

Substances chimiques

Lipids 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1539-1555

Subventions

Organisme : NIGMS NIH HHS
ID : U54 GM069338
Pays : United States
Organisme : Wellcome Trust
ID : 203014/Z/16/Z
Pays : United Kingdom

Informations de copyright

Copyright © 2020 Liebisch et al. Published by The American Society for Biochemistry and Molecular Biology, Inc.

Déclaration de conflit d'intérêts

Conflict of interest—The authors declare that they have no conflicts of interest with the contents of this article.

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Auteurs

Gerhard Liebisch (G)

Institute of Clinical Chemistry and Laboratory Medicine, Regensburg University Hospital, Regensburg, Germany.

Eoin Fahy (E)

Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.

Junken Aoki (J)

Graduate School of Pharmaceutical Sciences, University of Tokyo, Bunkyo-ku, Tokyo, Japan.

Edward A Dennis (EA)

Department of Chemistry and Biochemistry, Department of Pharmacology, School of Medicine, University of California San Diego, La Jolla, CA, USA.

Thierry Durand (T)

Institute of Biomolecules Max Mousseron, University of Montpellier, CNRS, ENSCM, Montpellier, France.

Christer S Ejsing (CS)

Department of Biochemistry and Molecular Biology, Villum Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark; Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.

Maria Fedorova (M)

Institute of Bioanalytical Chemistry, Faculty of Chemistry and Mineralogy, University of Leipzig, Leipzig, Germany; Center for Biotechnology and Biomedicine, University of Leipzig, Leipzig, Germany.

Ivo Feussner (I)

Department of Plant Biochemistry, Albrecht-von-Haller-Institute and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen, Germany.

William J Griffiths (WJ)

Swansea University Medical School, Swansea, United Kingdom.

Harald Köfeler (H)

Core Facility Mass Spectrometry, Medical University of Graz, Graz, Austria.

Alfred H Merrill (AH)

School of Biological Sciences and the Parker H. Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.

Robert C Murphy (RC)

Department of Pharmacology, University of Colorado at Denver, Aurora, CO, USA.

Valerie B O'Donnell (VB)

Systems Immunity Institute, Cardiff University, Cardiff, United Kingdom.

Olga Oskolkova (O)

Institute of Pharmaceutical Sciences, University of Graz, Graz, Austria.

Shankar Subramaniam (S)

Department of Biomedical Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.

Michael J O Wakelam (MJO)

Babraham Institute, Babraham Research Campus, Cambridge, United Kingdom.

Friedrich Spener (F)

Department of Molecular Biosciences, University of Graz, Graz, Austria; Division of Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, Graz, Austria. Electronic address: fritz.spener@uni-graz.at.

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Classifications MeSH

questionsmedicales.fr › Lipides › Update on LIPID MAPS classification,...
questionsmedicales.fr › Techniques d'investigation › Techniques de chimie analytique › Spectrométrie de masse › Update on LIPID MAPS classification,...
questionsmedicales.fr › Sciences de l'information › Langage › Linguistique › Terminologie comme sujet › Update on LIPID MAPS classification,...