Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
09 10 2020
09 10 2020
Historique:
received:
07
05
2020
accepted:
14
09
2020
entrez:
10
10
2020
pubmed:
11
10
2020
medline:
24
10
2020
Statut:
epublish
Résumé
Plant growth and development are regulated by a tightly controlled interplay between cell division, cell expansion and cell differentiation during the entire plant life cycle from seed germination to maturity and seed propagation. To explore some of the underlying molecular mechanisms in more detail, we selected different aerial tissue types of the model plant Arabidopsis thaliana, namely rosette leaf, flower and silique/seed and performed proteomic, phosphoproteomic and transcriptomic analyses of sequential growth stages using tandem mass tag-based mass spectrometry and RNA sequencing. With this exploratory multi-omics dataset, development dynamics of photosynthetic tissues can be investigated from different angles. As expected, we found progressive global expression changes between growth stages for all three omics types and often but not always corresponding expression patterns for individual genes on transcript, protein and phosphorylation site level. The biggest difference between proteomic- and transcriptomic-based expression information could be observed for seed samples. Proteomic and transcriptomic data is available via ProteomeXchange and ArrayExpress with the respective identifiers PXD018814 and E-MTAB-7978.
Identifiants
pubmed: 33037224
doi: 10.1038/s41597-020-00678-w
pii: 10.1038/s41597-020-00678-w
pmc: PMC7547660
doi:
Substances chimiques
Proteome
0
Types de publication
Journal Article
Comment
Langues
eng
Sous-ensembles de citation
IM
Pagination
334Subventions
Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : SFB924
Pays : International
Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : SFB924
Pays : International
Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : SFB924
Pays : International
Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : SFB924
Pays : International
Organisme : Deutsche Forschungsgemeinschaft (German Research Foundation)
ID : SFB924
Pays : International
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : BMBF 031L0168
Pays : International
Organisme : Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research)
ID : BMBF 031L0168
Pays : International
Commentaires et corrections
Type : CommentOn
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