Predicting alcohol dependence from multi-site brain structural measures.
addiction
alcohol dependence
genetic algorithm
machine learning
multi-site
prediction
structural MRI
Journal
Human brain mapping
ISSN: 1097-0193
Titre abrégé: Hum Brain Mapp
Pays: United States
ID NLM: 9419065
Informations de publication
Date de publication:
01 2022
01 2022
Historique:
revised:
21
09
2020
received:
12
06
2020
accepted:
06
10
2020
pubmed:
17
10
2020
medline:
29
3
2022
entrez:
16
10
2020
Statut:
ppublish
Résumé
To identify neuroimaging biomarkers of alcohol dependence (AD) from structural magnetic resonance imaging, it may be useful to develop classification models that are explicitly generalizable to unseen sites and populations. This problem was explored in a mega-analysis of previously published datasets from 2,034 AD and comparison participants spanning 27 sites curated by the ENIGMA Addiction Working Group. Data were grouped into a training set used for internal validation including 1,652 participants (692 AD, 24 sites), and a test set used for external validation with 382 participants (146 AD, 3 sites). An exploratory data analysis was first conducted, followed by an evolutionary search based feature selection to site generalizable and high performing subsets of brain measurements. Exploratory data analysis revealed that inclusion of case- and control-only sites led to the inadvertent learning of site-effects. Cross validation methods that do not properly account for site can drastically overestimate results. Evolutionary-based feature selection leveraging leave-one-site-out cross-validation, to combat unintentional learning, identified cortical thickness in the left superior frontal gyrus and right lateral orbitofrontal cortex, cortical surface area in the right transverse temporal gyrus, and left putamen volume as final features. Ridge regression restricted to these features yielded a test-set area under the receiver operating characteristic curve of 0.768. These findings evaluate strategies for handling multi-site data with varied underlying class distributions and identify potential biomarkers for individuals with current AD.
Identifiants
pubmed: 33064342
doi: 10.1002/hbm.25248
pmc: PMC8675424
doi:
Types de publication
Journal Article
Meta-Analysis
Multicenter Study
Research Support, N.I.H., Extramural
Research Support, N.I.H., Intramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
555-565Subventions
Organisme : NIAAA NIH HHS
ID : R01 AA013892
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA014100
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA020726
Pays : United States
Organisme : NCRR NIH HHS
ID : UL1 RR024925
Pays : United States
Organisme : NIDA NIH HHS
ID : R01-DA020726
Pays : United States
Organisme : NIH HHS
ID : UL1-RR24925-01
Pays : United States
Organisme : NIDA NIH HHS
ID : R01DA047119
Pays : United States
Organisme : NIDA NIH HHS
ID : PL1 DA024859
Pays : United States
Organisme : NIBIB NIH HHS
ID : U54 EB020403
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA047119
Pays : United States
Organisme : NIAAA NIH HHS
ID : ZIA AA000125-04 DICB
Pays : United States
Organisme : NIH HHS
ID : U54 EB020403
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001863
Pays : United States
Organisme : NIAAA NIH HHS
ID : R01-AA013892
Pays : United States
Organisme : Intramural NIH HHS
ID : ZIA AA000125
Pays : United States
Organisme : NIDA NIH HHS
ID : R01-DA014100
Pays : United States
Organisme : NIDA NIH HHS
ID : PL30-1DA024859-01
Pays : United States
Organisme : NIDA NIH HHS
ID : T32DA043593
Pays : United States
Organisme : NIH HHS
ID : R01 DA018307
Pays : United States
Organisme : NIDA NIH HHS
ID : T32 DA043593
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA018307
Pays : United States
Informations de copyright
© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.
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