Hospitalised COVID-19 patients of the Mount Sinai Health System: a retrospective observational study using the electronic medical records.


Journal

BMJ open
ISSN: 2044-6055
Titre abrégé: BMJ Open
Pays: England
ID NLM: 101552874

Informations de publication

Date de publication:
26 10 2020
Historique:
entrez: 28 10 2020
pubmed: 29 10 2020
medline: 5 11 2020
Statut: epublish

Résumé

To assess association of clinical features on COVID-19 patient outcomes. Retrospective observational study using electronic medical record data. Five member hospitals from the Mount Sinai Health System in New York City (NYC). 28 336 patients tested for SARS-CoV-2 from 24 February 2020 to 15 April 2020, including 6158 laboratory-confirmed COVID-19 cases. Positive test rates and in-hospital mortality were assessed for different racial groups. Among positive cases admitted to the hospital (N=3273), we estimated HR for both discharge and death across various explanatory variables, including patient demographics, hospital site and unit, smoking status, vital signs, lab results and comorbidities. Hispanics (29%) and African Americans (25%) had disproportionately high positive case rates relative to their representation in the overall NYC population (p<0.05); however, no differences in mortality rates were observed in hospitalised patients based on race. Outcomes differed significantly between hospitals (Gray's T=248.9; p<0.05), reflecting differences in average baseline age and underlying comorbidities. Significant risk factors for mortality included age (HR 1.05, 95% CI 1.04 to 1.06; p=1.15e-32), oxygen saturation (HR 0.985, 95% CI 0.982 to 0.988; p=1.57e-17), care in intensive care unit areas (HR 1.58, 95% CI 1.29 to 1.92; p=7.81e-6) and elevated creatinine (HR 1.75, 95% CI 1.47 to 2.10; p=7.48e-10), white cell count (HR 1.02, 95% CI 1.01 to 1.04; p=8.4e-3) and body mass index (BMI) (HR 1.02, 95% CI 1.00 to 1.03; p=1.09e-2). Deceased patients were more likely to have elevated markers of inflammation. While race was associated with higher risk of infection, we did not find racial disparities in inpatient mortality suggesting that outcomes in a single tertiary care health system are comparable across races. In addition, we identified key clinical features associated with reduced mortality and discharge. These findings could help to identify which COVID-19 patients are at greatest risk of a severe infection response and predict survival.

Identifiants

pubmed: 33109676
pii: bmjopen-2020-040441
doi: 10.1136/bmjopen-2020-040441
pmc: PMC7592304
doi:

Types de publication

Journal Article Observational Study

Langues

eng

Sous-ensembles de citation

IM

Pagination

e040441

Informations de copyright

© Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.

Déclaration de conflit d'intérêts

Competing interests: WKO is a paid consultant to Astellas, Astra Zeneca, Bayer, Janssen, Sanofi, Sema4, and TeneoBio.

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Auteurs

Zichen Wang (Z)

Sema4, Stamford, Connecticut, USA.

Amanda Zheutlin (A)

Sema4, Stamford, Connecticut, USA.

Yu-Han Kao (YH)

Sema4, Stamford, Connecticut, USA.

Kristin Ayers (K)

Sema4, Stamford, Connecticut, USA.

Susan Gross (S)

Sema4, Stamford, Connecticut, USA.
Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Patricia Kovatch (P)

Mount Sinai Data Warehouse, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Sharon Nirenberg (S)

Mount Sinai Data Warehouse, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Alexander Charney (A)

Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Girish Nadkarni (G)

The Hasso Plattner Institute for Digital Health at the Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Jessica K De Freitas (JK)

Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Hasso Plattner Institute for Digital Health at the Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Paul O'Reilly (P)

Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Allan Just (A)

Institute for Exposomic Research, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Carol Horowitz (C)

Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Glenn Martin (G)

Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Andrea Branch (A)

Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Benjamin S Glicksberg (BS)

Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
The Hasso Plattner Institute for Digital Health at the Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Dennis Charney (D)

The Office of the Dean, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

David Reich (D)

Department of Anesthesiology, Perioperative and Pain Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

William K Oh (WK)

Tisch Cancer Institute and Division of Hematology and Medical Oncology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Eric Schadt (E)

Sema4, Stamford, Connecticut, USA.
Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Rong Chen (R)

Sema4, Stamford, Connecticut, USA.
Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Li Li (L)

Sema4, Stamford, Connecticut, USA li.li@mssm.edu.
Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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