Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
19 11 2020
Historique:
received: 11 08 2020
accepted: 29 10 2020
entrez: 20 11 2020
pubmed: 21 11 2020
medline: 14 1 2021
Statut: epublish

Résumé

Single Particle Imaging (SPI) with intense coherent X-ray pulses from X-ray free-electron lasers (XFELs) has the potential to produce molecular structures without the need for crystallization or freezing. Here we present a dataset of 285,944 diffraction patterns from aerosolized Coliphage PR772 virus particles injected into the femtosecond X-ray pulses of the Linac Coherent Light Source (LCLS). Additional exposures with background information are also deposited. The diffraction data were collected at the Atomic, Molecular and Optical Science Instrument (AMO) of the LCLS in 4 experimental beam times during a period of four years. The photon energy was either 1.2 or 1.7 keV and the pulse energy was between 2 and 4 mJ in a focal spot of about 1.3 μm x 1.7 μm full width at half maximum (FWHM). The X-ray laser pulses captured the particles in random orientations. The data offer insight into aerosolised virus particles in the gas phase, contain information relevant to improving experimental parameters, and provide a basis for developing algorithms for image analysis and reconstruction.

Identifiants

pubmed: 33214568
doi: 10.1038/s41597-020-00745-2
pii: 10.1038/s41597-020-00745-2
pmc: PMC7678860
doi:

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

404

Subventions

Organisme : U.S. Department of Health & Human Services | National Institutes of Health (NIH)
ID : 5R01GM117342
Pays : International
Organisme : National Science Foundation (NSF)
ID : 1551489
Pays : International
Organisme : U.S. Department of Energy (DOE)
ID : DE-SC0002164
Pays : International
Organisme : NIGMS NIH HHS
ID : R01 GM117342
Pays : United States
Organisme : EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions)
ID : 701647
Pays : International
Organisme : Helmholtz Association
ID : HRSF-0002/18-41-06001
Pays : International
Organisme : National Science Foundation (NSF)
ID : NSF-1231306
Pays : International
Organisme : National Science Foundation (NSF)
ID : 1231306
Pays : International

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Auteurs

Haoyuan Li (H)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Physics Department, Stanford University, 450 Serra Mall, Stanford, California, 94305, USA.

Reza Nazari (R)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Brian Abbey (B)

ARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.

Roberto Alvarez (R)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Andrew Aquila (A)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA. aquila@slac.stanford.edu.

Kartik Ayyer (K)

Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany.
Center for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.

Anton Barty (A)

Center for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.
DESY, Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.

Peter Berntsen (P)

ARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.

Johan Bielecki (J)

European XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Alberto Pietrini (A)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Maximilian Bucher (M)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.

Gabriella Carini (G)

Brookhaven National Laboratory, Bldg 535B, Upton, NY, 11973, USA.

Henry N Chapman (HN)

Center for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Centre for Ultrafast Imaging, Luruper Chaussee 149, 22761, Hamburg, Germany.

Alice Contreras (A)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Benedikt J Daurer (BJ)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Diamond Light Source, Harwell Science & Innovation Campus, Didcot, OX11 0DE, United Kingdom.

Hasan DeMirci (H)

Stanford PULSE Institute, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Koc University, Rumelifeneri, Sariyer Rumeli Feneri Yolu, 34450, Sariyer/Istanbul, Turkey.

Leonie Flűckiger (L)

ARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.

Matthias Frank (M)

Lawrence Livermore National Laboratory, 7000 East Avenue, L-452, Livermore, California, 94550, USA.

Janos Hajdu (J)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
The European Extreme Light Infrastructure, Institute of Physics, Academy of Sciences of the Czech Republic, Za Radnicic 835, 25241, Dolní Břežany, Czech Republic.

Max F Hantke (MF)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Brenda G Hogue (BG)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Ahmad Hosseinizadeh (A)

University of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.

Mark S Hunter (MS)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.

H Olof Jönsson (HO)

Department of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.

Richard A Kirian (RA)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Ruslan P Kurta (RP)

European XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.

Duane Loh (D)

Department of Physics, National University of Singapore, 14 Science Drive 4, Blk S1A, Level 2, S1A-02-07, Lee Wee Kheng Building, Singapore, 117557, Singapore.

Filipe R N C Maia (FRNC)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Adrian P Mancuso (AP)

European XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, 3086, Australia.

Andrew J Morgan (AJ)

ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria, 3010, Australia. morganaj@unimelb.edu.au.

Matthew McFadden (M)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Kerstin Muehlig (K)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Anna Munke (A)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Hemanth Kumar Narayana Reddy (HKN)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Carl Nettelblad (C)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Abbas Ourmazd (A)

University of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.

Max Rose (M)

DESY, Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.

Peter Schwander (P)

University of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.

M Marvin Seibert (M)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Jonas A Sellberg (JA)

Department of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.

Raymond G Sierra (RG)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.

Zhibin Sun (Z)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Photon Science Division, Paul Scherrer Institute, CH-5232, Villigen PSI, Switzerland.

Martin Svenda (M)

Department of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.

Ivan A Vartanyants (IA)

DESY, Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.
NRNU MEPhI, Kashirskoe shosse 31, 115409, Moscow, Russia.

Peter Walter (P)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.

Daniel Westphal (D)

Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.

Garth Williams (G)

Brookhaven National Laboratory, Bldg 535B, Upton, NY, 11973, USA.

P Lourdu Xavier (PL)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany.
Center for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.

Chun Hong Yoon (CH)

SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.

Sahba Zaare (S)

Arizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

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