Indonesian native goats (Capra hircus) reveal highest genetic frequency of mitochondrial DNA haplogroup B in the world.
Indonesia
genetic diversity
goats
haplogroup B
mitochondrial DNA
Journal
Animal science journal = Nihon chikusan Gakkaiho
ISSN: 1740-0929
Titre abrégé: Anim Sci J
Pays: Australia
ID NLM: 100956805
Informations de publication
Date de publication:
Historique:
received:
09
09
2020
revised:
12
10
2020
accepted:
15
10
2020
entrez:
22
11
2020
pubmed:
23
11
2020
medline:
1
12
2020
Statut:
ppublish
Résumé
The objective of this study was to determine mtDNA sequences of the 481 bp HV1 region from two Indonesian native goat breeds, Kacang and Marica, to confirm the phylogeographic distribution of caprine haplogroup B in Southeast Asia. Based on these sequences, 12 haplotypes were observed and categorized into the predominant haplogroup B and minority haplogroup A, indicating that Indonesian native goats present the highest frequency (0.950) of the haplogroup B in the world. These results strongly emphasize previous observations of the haplogroup B frequencies tending to increase southeastward in Southeast Asia. Additionally, this suggests that goats primary bred into Southeast Asia might predominantly carry haplogroup B. This could essentially contribute to the understanding of the origin, propagation route and/or introgression history of Southeast Asian goats.
Substances chimiques
DNA, Mitochondrial
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e13485Subventions
Organisme : Grant-in-Aid for Scientific Research (B), JSPS
ID : 17H04643
Organisme : Grant-in-Aid for Challenging Exploratory Research, JSPS
ID : 19K22367
Informations de copyright
© 2020 Japanese Society of Animal Science.
Références
Beja-Pereira, A., England, P. R., Ferrand, N., Jordan, S., Bakhiet, A. O., Abdalla, M. A., & Luikart, G. (2004). African origins of the domestic donkey. Science, 304, 1781. https://doi.org/10.1126/science
Chen, S. Y., Su, Y. H., Wu, S. F., Sha, T., & Zhang, Y. P. (2005). Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Molecular Phylogenetics and Evolution, 37, 804-814. https://doi.org/10.1016/j.ympev.2005.06.014
Colli, L., Lancioni, H., Cardinali, I., Olivieri, A., Capodiferro, M. R., Pellecchia, M., Rzepus, M., Zamani, W., Naderi, S., Gandini, F., Vahidi, S. M. F., Agha, S., Randi, E., Battaglia, V., Sardina, M. T., Portolano, B., Rezaei, H. R., Lymberakis, P., Boyer, F., … Achilli, A. (2015). Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability. BMC Genomics, 16, 1115. https://doi.org/10.1186/s12864-015-2342-2
Joshi, M. B., Rout, P. K., Mandal, A. K., Tyler-Smith, C., Singh, L., & Thangaraj, K. (2004). Phylogeography and origin of Indian domestic goats. Molecular Biology and Evolution, 21, 454-462. https://doi.org/10.1093/molbev/msh038
Kato, T., Takahashi, A., Matsumoto, H., Sasazaki, S., Faruque, M. O., Masangkay, J. S., & Mannen, H. (2013). Mitochondrial genetic diversity of goat in South Eastern Asia. Nihontikusangakkaishi, 84, 149-155.
Lin, B. Z., Odahara, S., Isida, M., Kato, T., Sasazaki, S., Nozawa, K., & Mannen, H. (2013). Molecular phylogeography and genetic diversity of East Asian goats. Animal Genetics, 44, 79-85. https://doi.org/10.1111/j.1365-2052.2012.02358.x
Luikart, G., Gielly, L., Excoffier, L., Vigne, J. D., Bouvet, J., & Taberlet, P. (2001). Multiple maternal origins and weak phylogeographic structure in domestic goats. Proceeding of the National Academy of Science of United States of America, 98, 5927-5932. https://doi.org/10.1073/pnas.091591198
Mannen, H., Nagata, Y., & Tsuji, S. (2001). Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus). Biochemical Genetics, 39, 145-154. https://doi.org/10.1023/A:1010266207735
Naderi, S., Rezaei, H.-R., Pompanon, F., Blum, M. G. B., Negrini, R., Naghash, H.-R., Balkız, Ö., Mashkour, M., Gaggiotti, O. E., Ajmone-Marsan, P., Kence, A., Vigne, J.-D., & Taberlet, P. (2008). The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals. Proceeding of the National Academy of Science of United States of America, 105, 17659-17664. https://doi.org/10.1073/pnas.0804782105
Naderi, S., Rezaei, H. R., Taberlet, P., Zundel, S., Rafat, S. A., Naghash, H. R., El-Barody, M. A. A., Ertugrul, O., Pompanon, F., Econogene Consortium. (2007). Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS One, 2, e1012. https://doi.org/10.1371/journal.pone.0001012
Tabata, R., Kawaguchi, F., Sasazaki, S., Yamamoto, Y., Bakhtin, M., Kazymbet, P., Meldevekob, A., Suleimenov, M. Z., Nishibori, M., & Mannen, H. (2019). The Eurasian Steppe is an important goat propagation route: A phylogeographic analysis using mitochondrial DNA and Y-chromosome sequences of Kazakhstani goats. Animal Science Journal, 90, 317-322. https://doi.org/10.1111/asj.13144
Tabata, R., Kawaguchi, F., Sasazaki, S., Yamamoto, Y., Rakotondraparany, F., Ratsoavina, F. M., Yonezawa, T., & Mannen, H. (2019). Phylogeographic analysis of Madagascan goats using mtDNA control region and SRY gene sequences. Zoological Science, 36, 294-298. https://doi.org/10.2108/zs180184
Troy, C. S., MacHugh, D. E., Bailey, J. F., Magee, D. A., Loftus, R. T., Cunningham, P., & Bradley, D. G. (2001). Genetic evidence for Near-Eastern origins of European cattle. Nature, 410, 1088-1091. https://doi.org/10.1186/s13059-015-0790-2
Wu, Y.-P., Guan, W.-J., Zhao, Q.-J., He, X.-H., Pu, Y.-B., Huo, J.-H., Xie, J.-F., Han, J.-L., Rao, S.-Q., & Ma, Y.-H. (2009). A fine map for maternal lineage analysis by mitochondrial hypervariable region in 12 Chinese goat breeds. Animal Science Journal, 80, 372-380. https://doi.org/10.1111/j.1740-0929.2009.00659.x
Zhao, Y., Zhao, R., Zhao, Z., Xu, H., Zhao, E., & Zhang, J. (2014). Genetic diversity and molecular phylogeography of Chinese domestic goats by large-scale mitochondrial DNA analysis. Molecular Biology Reports, 41, 3695-3704. https://doi.org/10.1007/s11033-014-3234-2