Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Adolescent
Adult
Aged
Aged, 80 and over
COVID-19
/ epidemiology
Child
Child, Preschool
Female
Genome, Viral
/ genetics
Genomics
/ methods
Geography
Humans
Infant
Infant, Newborn
Male
Middle Aged
New Zealand
/ epidemiology
Pandemics
Phylogeny
SARS-CoV-2
/ classification
Whole Genome Sequencing
/ methods
Young Adult
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
11 12 2020
11 12 2020
Historique:
received:
19
08
2020
accepted:
19
11
2020
entrez:
14
12
2020
pubmed:
15
12
2020
medline:
29
12
2020
Statut:
epublish
Résumé
New Zealand, a geographically remote Pacific island with easily sealable borders, implemented a nationwide 'lockdown' of all non-essential services to curb the spread of COVID-19. Here, we generate 649 SARS-CoV-2 genome sequences from infected patients in New Zealand with samples collected during the 'first wave', representing 56% of all confirmed cases in this time period. Despite its remoteness, the viruses imported into New Zealand represented nearly all of the genomic diversity sequenced from the global virus population. These data helped to quantify the effectiveness of public health interventions. For example, the effective reproductive number, R
Identifiants
pubmed: 33311501
doi: 10.1038/s41467-020-20235-8
pii: 10.1038/s41467-020-20235-8
pmc: PMC7733492
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6351Références
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