Statistical Optimisation of Phenol Degradation and Pathway Identification through Whole Genome Sequencing of the Cold-Adapted Antarctic Bacterium,

Acclimatization Bacterial Proteins / genetics Biodegradation, Environmental Catechol 1,2-Dioxygenase / genetics Catechols / metabolism Cold Temperature Genome, Bacterial Rhodococcus / genetics
Antarctica Rhodococcus de novo assembly next-generation sequencing β-keto-adipate pathway

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
09 Dec 2020
Historique:
received: 22 09 2020
revised: 18 11 2020
accepted: 19 11 2020
entrez: 15 12 2020
pubmed: 16 12 2020
medline: 3 3 2021
Statut: epublish

Résumé

Study of the potential of Antarctic microorganisms for use in bioremediation is of increasing interest due to their adaptations to harsh environmental conditions and their metabolic potential in removing a wide variety of organic pollutants at low temperature. In this study, the psychrotolerant bacterium

Identifiants

DOI: 10.3390/ijms21249363 PMID: 33316871 PMC: PMC7764105
pubmed: 33316871
pii: ijms21249363
doi: 10.3390/ijms21249363
pmc: PMC7764105
pii:
doi:

Substances chimiques

Bacterial Proteins 0
Catechols 0
Catechol 1,2-Dioxygenase EC 1.13.11.1

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Universiti Putra Malaysia
ID : 9300430
Organisme : Universiti Putra Malaysia
ID : 9631800
Organisme : Universiti Putra Malaysia
ID : 9660000
Organisme : Higher Institute of Centre of Excellence, Ministry of Higher Education, Malaysia
ID : IIOES-2014G
Organisme : Natural Environment Research Council
ID : British Antarctic Survey's 'Biodiversity, Evolution and Adaptation'

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Auteurs

Gillian Li Yin Lee (GLY)

Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang UPM 43400, Selangor, Malaysia.

Nur Nadhirah Zakaria (NN)

Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang UPM 43400, Selangor, Malaysia.

Peter Convey (P)

British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge CB3 0ET, UK.
ORCID: 0000-0001-8497-9903

Hiroyuki Futamata (H)

Graduate School of Science and Technology, Shizuoka University, Hamamatsu 432-8561, Japan.
Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Shizuoka 422-8529, Japan.

Azham Zulkharnain (A)

Department of Bioscience and Engineering, College of Systems Engineering and Science, Shibaura Institute of Technology, 307 Fukasaku, Minuma-ku, Saitama 337-8570, Japan.
ORCID: 0000-0001-9173-8171

Kenshi Suzuki (K)

Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Shizuoka 422-8529, Japan.

Khalilah Abdul Khalil (K)

School of Biology, Faculty of Applied Sciences, Universiti Teknologi MARA, Shah Alam 40450, Selangor, Malaysia.

Noor Azmi Shaharuddin (NA)

Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang UPM 43400, Selangor, Malaysia.

Siti Aisyah Alias (SA)

National Antarctic Research Centre, B303 Level 3, Block B, IPS Building, Universiti Malaya, Kuala Lumpur 50603, Malaysia.
Institute of Ocean and Earth Sciences, B303 Level 3, Block B, Universiti Malaya, Lembah Pantai, Kuala Lumpur 50603, Malaysia.

Gerardo González-Rocha (G)

Laboratorio de Investigacion en Agentes Antibacterianos, Facultad de Ciencias Biologicas, Universidad de Concepcion, Concepcion 4070386, Chile.
ORCID: 0000-0003-2351-1236

Siti Aqlima Ahmad (SA)

Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang UPM 43400, Selangor, Malaysia.
National Antarctic Research Centre, B303 Level 3, Block B, IPS Building, Universiti Malaya, Kuala Lumpur 50603, Malaysia.
ORCID: 0000-0002-7625-3704

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Classifications MeSH

questionsmedicales.fr › Phénomènes biologiques › Adaptation biologique › Adaptation physiologique › Acclimatation › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines bactériennes › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Pollution de l'environnement › Assainissement et restauration de l'environnement › Dépollution biologique de l'environnement › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Oxidoreductases › Oxygénases › Dioxygenases › Catechol 1,2-dioxygenase › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Composés chimiques organiques › Hydrocarbures › Hydrocarbures cycliques › Hydrocarbures aromatiques › Dérivés du benzène › Phénols › Catéchols › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Environnement et santé publique › Environnement › Concepts météorologiques › Atmosphère › Temps (météorologie) › Température › Basse température › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › Statistical Optimisation of Phenol Degradation...
questionsmedicales.fr › Bactéries › Bactéries à Gram positif › Nocardiaceae › Rhodococcus › Statistical Optimisation of Phenol Degradation...