DetR DB: A Database of Ionizing Radiation Resistance Determinants.


Journal

Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097

Informations de publication

Date de publication:
09 12 2020
Historique:
received: 18 10 2020
revised: 23 11 2020
accepted: 01 12 2020
entrez: 15 12 2020
pubmed: 16 12 2020
medline: 23 7 2021
Statut: epublish

Résumé

Nuclear pollution is an urgent environmental issue and is a consequence of rapid industrialization and nuclear accidents in the past. Remediation of nuclear polluted sites using microbial vital activity (bioremediation) is a promising approach to recover contaminated areas in an environmentally friendly and cost-saving way. At the same time, the number of known bacterial and archaeal species able to withstand extremely high doses of ionizing radiation (IR) is steadily growing every year, together with growing knowledge about mechanisms of radioresistance that opens up opportunities for developing new biotechnological solutions. However, these data are often not systemized, and can be difficult to access. Here, we present the Determinants of Radioresistance Database, or DetR DB, gathering a comprehensive catalog of radioresistant microbes and their molecular and genetic determinants of enhanced IR tolerance. The database provides search tools, including taxonomy, common gene name, and BLAST. DetR DB will be a useful tool for the research community by facilitating the extraction of the necessary information to help further analysis of radiation-resistant mechanisms.

Identifiants

pubmed: 33317063
pii: genes11121477
doi: 10.3390/genes11121477
pmc: PMC7764150
pii:
doi:

Substances chimiques

Environmental Pollutants 0

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Références

Mikrobiologiia. 2002 Sep-Oct;71(5):705-12
pubmed: 12449639
Curr Opin Biotechnol. 1999 Jun;10(3):230-3
pubmed: 10361068
Mikrobiologiia. 2015 Mar-Apr;84(2):184-91
pubmed: 26263624
Microbiology (Reading). 2006 Aug;152(Pt 8):2469-2477
pubmed: 16849809
PLoS One. 2018 Jan 12;13(1):e0190953
pubmed: 29329319
J Biosci. 2019 Oct;44(5):
pubmed: 31719217
Appl Environ Microbiol. 2004 Jul;70(7):4230-41
pubmed: 15240306
PLoS One. 2015 Mar 19;10(3):e0118709
pubmed: 25789482
Antioxid Redox Signal. 2014 Jul 10;21(2):260-92
pubmed: 24382094
Radiat Prot Dosimetry. 2019 Oct 1;184(3-4):504-509
pubmed: 31038686
J Bacteriol. 2009 Aug;191(16):5240-52
pubmed: 19502398
PLoS One. 2008;3(12):e3878
pubmed: 19057647
J Photochem Photobiol B. 1998 May 15;43(2):152-7
pubmed: 9679315
J Environ Radioact. 2019 Jan;196:50-63
pubmed: 30388428
mBio. 2018 Jun 26;9(3):
pubmed: 29946053
Microb Biotechnol. 2013 Jul;6(4):349-60
pubmed: 23617701
Life (Basel). 2013 Aug 07;3(3):482-5
pubmed: 25369817
Front Microbiol. 2018 Jun 04;9:1132
pubmed: 29915565
Ann ICRP. 2005;35(1):1-110, iii-iv
pubmed: 16164984

Auteurs

Alina Ryabova (A)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.

Olga Kozlova (O)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.

Azat Kadirov (A)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.

Anastasiia Ananeva (A)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.

Oleg Gusev (O)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.
Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, RIKEN, Yokohama 230-0045, Japan.

Elena Shagimardanova (E)

Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia.

Articles similaires

Populus Soil Microbiology Soil Microbiota Fungi
Aerosols Humans Decontamination Air Microbiology Masks
Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Semiconductors Photosynthesis Polymers Carbon Dioxide Bacteria

Classifications MeSH