A phylogeny for the Drosophila montium species group: A model clade for comparative analyses.
Bayesian inference
Biogeography
Chronograms
Drosophila phylogeny
Maximum likelihood inference
Phylogenetic discordance
Journal
Molecular phylogenetics and evolution
ISSN: 1095-9513
Titre abrégé: Mol Phylogenet Evol
Pays: United States
ID NLM: 9304400
Informations de publication
Date de publication:
05 2021
05 2021
Historique:
received:
04
04
2020
revised:
18
12
2020
accepted:
24
12
2020
pubmed:
3
1
2021
medline:
22
6
2021
entrez:
2
1
2021
Statut:
ppublish
Résumé
The Drosophila montium species group is a clade of 94 named species, closely related to the model species D. melanogaster. The montium species group is distributed over a broad geographic range throughout Asia, Africa, and Australasia. Species of this group possess a wide range of morphologies, mating behaviors, and endosymbiont associations, making this clade useful for comparative analyses. We use genomic data from 42 available species to estimate the phylogeny and relative divergence times within the montium species group, and its relative divergence time from D. melanogaster. To assess the robustness of our phylogenetic inferences, we use 3 non-overlapping sets of 20 single-copy coding sequences and analyze all 60 genes with both Bayesian and maximum likelihood methods. Our analyses support monophyly of the group. Apart from the uncertain placement of a single species, D. baimaii, our analyses also support the monophyly of all seven subgroups proposed within the montium group. Our phylograms and relative chronograms provide a highly resolved species tree, with discordance restricted to estimates of relatively short branches deep in the tree. In contrast, age estimates for the montium crown group, relative to its divergence from D. melanogaster, depend critically on prior assumptions concerning variation in rates of molecular evolution across branches, and hence have not been reliably determined. We discuss methodological issues that limit phylogenetic resolution - even when complete genome sequences are available - as well as the utility of the current phylogeny for understanding the evolutionary and biogeographic history of this clade.
Identifiants
pubmed: 33387647
pii: S1055-7903(20)30333-X
doi: 10.1016/j.ympev.2020.107061
pmc: PMC7946709
mid: NIHMS1662294
pii:
doi:
Substances chimiques
Drosophila Proteins
0
DNA
9007-49-2
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
107061Subventions
Organisme : NIGMS NIH HHS
ID : F32 GM120893
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM104325
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM122592
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM124701
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States
Informations de copyright
Copyright © 2021 Elsevier Inc. All rights reserved.
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