RNA stabilization by a poly(A) tail 3'-end binding pocket and other modes of poly(A)-RNA interaction.

Crystallization Nucleic Acid Conformation Oryza Poly A / chemistry Polyadenylation RNA Stability RNA, Messenger / chemistry

Journal

Science (New York, N.Y.)
ISSN: 1095-9203
Titre abrégé: Science
Pays: United States
ID NLM: 0404511

Informations de publication

Date de publication:
05 02 2021
Historique:
received: 04 09 2020
accepted: 20 11 2020
pubmed: 9 1 2021
medline: 24 2 2021
entrez: 8 1 2021
Statut: ppublish

Résumé

Polyadenylate [poly(A)] tail addition to the 3' end of a wide range of RNAs is a highly conserved modification that plays a central role in cellular RNA function. Elements for nuclear expression (ENEs) are cis-acting RNA elements that stabilize poly(A) tails by sequestering them in RNA triplex structures. A crystal structure of a double ENE from a rice hAT transposon messenger RNA complexed with poly(A)

Identifiants

DOI: 10.1126/science.abe6523 PMID: 33414189 PMC: PMC9491362
pubmed: 33414189
pii: science.abe6523
doi: 10.1126/science.abe6523
pmc: PMC9491362
mid: NIHMS1833457
pii:
doi:

Substances chimiques

RNA, Messenger 0
Poly A 24937-83-5

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NCI NIH HHS
ID : P01 CA016038
Pays : United States
Organisme : NIGMS NIH HHS
ID : P01 GM022778
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA259386
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States

Informations de copyright

Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Références

Nat Struct Mol Biol. 2008 Feb;15(2):177-82
pubmed: 18204466
Genome Res. 2019 Jul;29(7):1100-1114
pubmed: 31227602
Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6404-6409
pubmed: 29866852
Cell. 2014 Feb 13;156(4):812-24
pubmed: 24529382
Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):4899-903
pubmed: 11296253
Cell Host Microbe. 2008 Dec 11;4(6):579-91
pubmed: 19064258
Oncotarget. 2016 Mar 15;7(11):11770-84
pubmed: 26930719
Nat Struct Mol Biol. 2018 Oct;25(10):903-905
pubmed: 30242214
Nat Rev Mol Cell Biol. 2020 Sep;21(9):542-556
pubmed: 32483315
Crit Rev Biochem Mol Biol. 2004 Jul-Aug;39(4):197-216
pubmed: 15596551
Science. 2012 May 25;336(6084):1030-3
pubmed: 22628654
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
Genes Dev. 2017 Jan 15;31(2):88-100
pubmed: 28202538
Nat Struct Mol Biol. 2009 Mar;16(3):343-4
pubmed: 19234468
Cell. 2019 May 30;177(6):1619-1631.e21
pubmed: 31104843
Mol Cell. 2016 Nov 17;64(4):734-745
pubmed: 27818140
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):479-85
pubmed: 20383001
Curr Opin Struct Biol. 2015 Oct;34:60-8
pubmed: 26209821
RNA. 2010 Nov;16(11):2144-55
pubmed: 20864509
Mol Cell. 2006 Dec 28;24(6):943-53
pubmed: 17189195
Science. 2016 Dec 2;354(6316):1148-1152
pubmed: 27934765
Nucleic Acids Res. 1983 Mar 11;11(5):1475-89
pubmed: 6828386
Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55
pubmed: 15299926
Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7897-902
pubmed: 9223284
Biochemistry. 2019 May 21;58(20):2474-2487
pubmed: 31008589
Cell. 2017 May 18;169(5):905-917.e11
pubmed: 28525757
RNA. 2016 Sep;22(9):1454-66
pubmed: 27368341
Wiley Interdiscip Rev RNA. 2020 Nov;11(6):e1598
pubmed: 32441456
RNA. 2015 Apr;21(4):630-1
pubmed: 25780168
Nature. 2014 Apr 3;508(7494):66-71
pubmed: 24476825
Virus Res. 2009 Feb;139(2):193-208
pubmed: 18621088
Genes Dev. 1999 Jan 15;13(2):188-201
pubmed: 9925643
Methods Enzymol. 1997;276:307-26
pubmed: 27754618
PLoS Pathog. 2011 Oct;7(10):e1002300
pubmed: 22022268
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10412-7
pubmed: 17563387
Genes Dev. 2012 Nov 1;26(21):2392-407
pubmed: 23073843
Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3485-94
pubmed: 26106162
Nat Struct Mol Biol. 2014 Jul;21(7):633-40
pubmed: 24952594
Mol Cell. 2014 Mar 20;53(6):1044-52
pubmed: 24582499
EMBO J. 2005 May 18;24(10):1831-41
pubmed: 15861127
Microb Cell. 2014 Apr;1(4):137-139
pubmed: 25279376
Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11676-81
pubmed: 12189204
Mol Cell. 2017 Mar 16;65(6):1109-1121.e3
pubmed: 28306506
Curr Opin Struct Biol. 2016 Feb;36:40-7
pubmed: 26797676
Wiley Interdiscip Rev RNA. 2014 Sep-Oct;5(5):601-22
pubmed: 24789627
J Mol Biol. 2008 Dec 31;384(5):1249-61
pubmed: 18950640
J Mol Med (Berl). 2013 Jul;91(7):791-801
pubmed: 23529762
Science. 2010 Nov 26;330(6008):1244-7
pubmed: 21109672
Methods Mol Biol. 2012;941:83-98
pubmed: 23065555
J Struct Biol. 2003 Apr;142(1):98-107
pubmed: 12718923
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
Cold Spring Harb Symp Quant Biol. 2019;84:155-163
pubmed: 32493762
Int J Cancer. 2016 Jul 15;139(2):269-80
pubmed: 26875870
Nat Struct Mol Biol. 2018 Sep;25(9):778-786
pubmed: 30104661
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Cell Rep. 2016 May 10;15(6):1266-76
pubmed: 27134163
Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19202-7
pubmed: 23129630
FEMS Microbiol Rev. 1999 Jun;23(3):353-70
pubmed: 10371038
Mol Cell. 2009 Mar 27;33(6):784-90
pubmed: 19285444
Cell Rep. 2012 Jul 26;2(1):26-32
pubmed: 22840393
Viruses. 2017 Jan 04;9(1):
pubmed: 28054965
Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13994-9
pubmed: 23918356
RNA. 2001 Apr;7(4):499-512
pubmed: 11345429
RNA. 2020 Dec;26(12):1767-1776
pubmed: 32848042
Nature. 2014 Jul 24;511(7510):435-9
pubmed: 25043052
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Mol Cell. 2018 Dec 6;72(5):862-874.e5
pubmed: 30318442
Biochemistry. 2004 Nov 9;43(44):14004-14
pubmed: 15518549
Cell. 2018 Sep 6;174(6):1537-1548.e29
pubmed: 30122351

Auteurs

Seyed-Fakhreddin Torabi (SF)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
ORCID: 0000-0003-1643-3583

Anand T Vaidya (AT)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad 500046, India.

Kazimierz T Tycowski (KT)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
ORCID: 0000-0002-4212-8585

Suzanne J DeGregorio (SJ)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.

Jimin Wang (J)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.

Mei-Di Shu (MD)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.

Thomas A Steitz (TA)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
ORCID: 0000-0002-3357-3505

Joan A Steitz (JA)

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06536, USA. joan.steitz@yale.edu.
Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06536, USA.
ORCID: 0000-0002-0534-8722

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Classifications MeSH

questionsmedicales.fr › Phénomènes chimiques › Cristallisation › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Conformation d'acide nucléique › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Poaceae › Oryza › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Nucléotides › Polynucléotides › Polyribonucléotides › Poly A › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Phénomènes génétiques › Régulation de l'expression des gènes › Maturation post-transcriptionnelle des ARN › Maturation de l'extrémité 3' des ARN › Polyadénylation › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Stabilité de l'ARN › RNA stabilization by a poly(A) tail 3'-end...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN messager › RNA stabilization by a poly(A) tail 3'-end...