Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma.
Antineoplastic Agents, Immunological
/ therapeutic use
B7-H1 Antigen
/ antagonists & inhibitors
CTLA-4 Antigen
/ antagonists & inhibitors
Carcinoma, Renal Cell
/ drug therapy
Cyclin-Dependent Kinase Inhibitor p16
/ genetics
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
High-Throughput Nucleotide Sequencing
Humans
Immune Checkpoint Inhibitors
/ therapeutic use
Immune Checkpoint Proteins
/ genetics
Kidney Neoplasms
/ drug therapy
Mutation
Programmed Cell Death 1 Receptor
/ antagonists & inhibitors
Proto-Oncogene Proteins c-myc
/ genetics
Retrospective Studies
Rhabdoid Tumor
/ drug therapy
Signal Transduction
Survival Analysis
Transcription, Genetic
Tumor Suppressor Proteins
/ genetics
Ubiquitin Thiolesterase
/ genetics
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
05 02 2021
05 02 2021
Historique:
received:
19
05
2020
accepted:
04
01
2021
entrez:
6
2
2021
pubmed:
7
2
2021
medline:
18
2
2021
Statut:
epublish
Résumé
Sarcomatoid and rhabdoid (S/R) renal cell carcinoma (RCC) are highly aggressive tumors with limited molecular and clinical characterization. Emerging evidence suggests immune checkpoint inhibitors (ICI) are particularly effective for these tumors, although the biological basis for this property is largely unknown. Here, we evaluate multiple clinical trial and real-world cohorts of S/R RCC to characterize their molecular features, clinical outcomes, and immunologic characteristics. We find that S/R RCC tumors harbor distinctive molecular features that may account for their aggressive behavior, including BAP1 mutations, CDKN2A deletions, and increased expression of MYC transcriptional programs. We show that these tumors are highly responsive to ICI and that they exhibit an immune-inflamed phenotype characterized by immune activation, increased cytotoxic immune infiltration, upregulation of antigen presentation machinery genes, and PD-L1 expression. Our findings build on prior work and shed light on the molecular drivers of aggressivity and responsiveness to ICI of S/R RCC.
Identifiants
pubmed: 33547292
doi: 10.1038/s41467-021-21068-9
pii: 10.1038/s41467-021-21068-9
pmc: PMC7865061
doi:
Substances chimiques
Antineoplastic Agents, Immunological
0
B7-H1 Antigen
0
BAP1 protein, human
0
CD274 protein, human
0
CDKN2A protein, human
0
CTLA-4 Antigen
0
CTLA4 protein, human
0
Cyclin-Dependent Kinase Inhibitor p16
0
Immune Checkpoint Inhibitors
0
Immune Checkpoint Proteins
0
MYC protein, human
0
PDCD1 protein, human
0
Programmed Cell Death 1 Receptor
0
Proto-Oncogene Proteins c-myc
0
Tumor Suppressor Proteins
0
Ubiquitin Thiolesterase
EC 3.4.19.12
Types de publication
Clinical Trial
Journal Article
Multicenter Study
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
808Subventions
Organisme : NCI NIH HHS
ID : P50 CA101942
Pays : United States
Organisme : NCI NIH HHS
ID : F31 CA250136
Pays : United States
Organisme : NCI NIH HHS
ID : R50 CA211482
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA227388
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA224917
Pays : United States
Commentaires et corrections
Type : CommentIn
Références
Semin Cancer Biol. 2013 Feb;23(1):18-25
pubmed: 22705278
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Cell Adh Migr. 2013 Mar-Apr;7(2):199-213
pubmed: 23302954
Nat Genet. 2012 Jun 10;44(7):751-9
pubmed: 22683710
Am J Surg Pathol. 2014 Sep;38(9):1260-5
pubmed: 25127094
Nat Biotechnol. 2019 Jul;37(7):773-782
pubmed: 31061481
Nature. 2018 Feb 22;554(7693):544-548
pubmed: 29443960
Clin Cancer Res. 2021 Jan 1;27(1):78-86
pubmed: 32873572
Eur J Cancer. 2009 Jan;45(2):228-47
pubmed: 19097774
Arch Pathol Lab Med. 2017 Jun;141(6):751-758
pubmed: 28557599
N Engl J Med. 2015 Nov 5;373(19):1803-13
pubmed: 26406148
Bioinformatics. 2012 Jun 1;28(11):1530-2
pubmed: 22539670
Cell Rep. 2016 Mar 15;14(10):2476-89
pubmed: 26947078
Clin Genitourin Cancer. 2019 Jun;17(3):e447-e453
pubmed: 30799129
Biostatistics. 2007 Jan;8(1):118-27
pubmed: 16632515
Genome Biol. 2011;12(4):R41
pubmed: 21527027
Am J Surg Pathol. 2000 Oct;24(10):1329-38
pubmed: 11023094
Nat Biotechnol. 2012 May;30(5):413-21
pubmed: 22544022
Clin Cancer Res. 2017 Nov 1;23(21):6686-6696
pubmed: 28710314
Nat Biotechnol. 2013 Mar;31(3):213-9
pubmed: 23396013
Cancer Discov. 2018 Sep;8(9):1142-1155
pubmed: 29884728
Eur Urol. 2016 Aug;70(2):348-57
pubmed: 26895810
Genome Biol. 2016 Jun 06;17(1):122
pubmed: 27268795
Genome Res. 2010 Sep;20(9):1297-303
pubmed: 20644199
JAMA Oncol. 2018 Sep 1;4(9):1237-1244
pubmed: 29902298
Ann Oncol. 2014 Mar;25(3):663-668
pubmed: 24458473
Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):2170-5
pubmed: 26864202
Ther Adv Med Oncol. 2018 Jan 18;10:1758834017749748
pubmed: 29383037
Nat Methods. 2015 May;12(5):453-7
pubmed: 25822800
Nat Chem Biol. 2016 Feb;12(2):109-16
pubmed: 26656090
J Clin Oncol. 2009 Dec 1;27(34):5794-9
pubmed: 19826129
Nature. 2014 Jan 23;505(7484):495-501
pubmed: 24390350
Elife. 2019 Nov 26;8:
pubmed: 31767055
Mod Pathol. 2019 Sep;32(9):1344-1358
pubmed: 30996253
Nature. 2018 Feb 22;554(7693):538-543
pubmed: 29443964
Cell. 2018 Apr 19;173(3):595-610.e11
pubmed: 29656894
J Urol. 2009 Nov;182(5):2164-71
pubmed: 19758641
Cancer Immunol Res. 2015 Dec;3(12):1303-7
pubmed: 26307625
Nat Cancer. 2020 Feb;1(2):235-248
pubmed: 32613204
Am J Surg Pathol. 2001 Mar;25(3):275-84
pubmed: 11224597
Nucleic Acids Res. 2013 Apr 1;41(6):e67
pubmed: 23303777
Oncoimmunology. 2019 Apr 25;8(8):1606639
pubmed: 31413914
Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503
pubmed: 31691815
Clin Genitourin Cancer. 2015 Apr;13(2):e79-85
pubmed: 25450036
Cell Syst. 2015 Dec 23;1(6):417-425
pubmed: 26771021
Cancer Discov. 2012 May;2(5):401-4
pubmed: 22588877
BMC Bioinformatics. 2011 Aug 04;12:323
pubmed: 21816040
Bioinformatics. 2011 Sep 15;27(18):2601-2
pubmed: 21803805
J Clin Oncol. 2015 May 1;33(13):1430-7
pubmed: 25452452
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Cancer Res. 2018 Jan 15;78(2):436-450
pubmed: 29150430
Nature. 2013 Jul 4;499(7456):43-9
pubmed: 23792563
Mod Pathol. 2015 Sep;28(9):1225-35
pubmed: 26111976
Life Sci Alliance. 2019 Jun 28;2(4):
pubmed: 31253656
Mol Cancer Ther. 2020 Jan;19(1):112-122
pubmed: 31575656
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Nat Commun. 2017 Jun 08;8:15770
pubmed: 28593993
Nucleic Acids Res. 2011 Sep 1;39(17):e118
pubmed: 21727090
Immunity. 2013 Oct 17;39(4):782-95
pubmed: 24138885
Nature. 2015 Oct 1;526(7571):68-74
pubmed: 26432245
Nat Med. 2020 Jun;26(6):909-918
pubmed: 32472114
BMC Bioinformatics. 2013 Jan 16;14:7
pubmed: 23323831
Nat Methods. 2010 Apr;7(4):248-9
pubmed: 20354512
Am J Surg Pathol. 2013 Oct;37(10):1490-504
pubmed: 24025520
Sci Rep. 2020 Jan 20;10(1):701
pubmed: 31959902
Hum Mutat. 2015 Apr;36(4):E2423-9
pubmed: 25703262
Sci Signal. 2013 Apr 02;6(269):pl1
pubmed: 23550210
Cell. 2017 Jul 27;170(3):564-576.e16
pubmed: 28753430
J Clin Oncol. 2002 Jan 1;20(1):289-96
pubmed: 11773181
Cancer. 2017 Dec 15;123(24):4823-4831
pubmed: 28832979
Bioinformatics. 2012 Jul 15;28(14):1811-7
pubmed: 22581179
Oncologist. 2020 Mar;25(3):252-258
pubmed: 32162795