Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
08 02 2021
08 02 2021
Historique:
received:
09
04
2020
accepted:
06
01
2021
entrez:
9
2
2021
pubmed:
10
2
2021
medline:
6
3
2021
Statut:
epublish
Résumé
We report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.
Identifiants
pubmed: 33558550
doi: 10.1038/s41597-021-00834-w
pii: 10.1038/s41597-021-00834-w
pmc: PMC7870887
doi:
Types de publication
Dataset
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
50Subventions
Organisme : United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service)
ID : 5030-21000-062-00D
Organisme : United Soybean Board (USB)
ID : 1320-532-5615
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