Chromosomal assembly of the nuclear genome of the endosymbiont-bearing trypanosomatid Angomonas deanei.
Angomonas deanei Carvalho (ATCC® PRA-265™)
Oxford Nanopore
genome assembly
Journal
G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598
Informations de publication
Date de publication:
18 01 2021
18 01 2021
Historique:
received:
19
08
2020
accepted:
17
11
2020
entrez:
9
2
2021
pubmed:
10
2
2021
medline:
7
7
2021
Statut:
ppublish
Résumé
Angomonas deanei is an endosymbiont-bearing trypanosomatid with several highly fragmented genome assemblies and unknown chromosome number. We present an assembly of the A. deanei nuclear genome based on Oxford Nanopore sequence that resolves into 29 complete or close-to-complete chromosomes. The assembly has several previously unknown special features; it has a supernumerary chromosome, a chromosome with a 340-kb inversion, and there is a translocation between two chromosomes. We also present an updated annotation of the chromosomal genome with 10,365 protein-coding genes, 59 transfer RNAs, 26 ribosomal RNAs, and 62 noncoding RNAs.
Identifiants
pubmed: 33561222
pii: 6007473
doi: 10.1093/g3journal/jkaa018
pmc: PMC8022732
pii:
doi:
Banques de données
figshare
['10.25387/g3.13252664.']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 200807/Z/16/Z
Pays : United Kingdom
Informations de copyright
© The Author(s) 2020. Published by Oxford University Press on behalf of Genetics Society of America.
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