The Peripheral Blood Transcriptome Is Correlated With PET Measures of Lung Inflammation During Successful Tuberculosis Treatment.
Adolescent
Adult
Aged
Binding Sites
Biomarkers
Cell-Free Nucleic Acids
Computational Biology
/ methods
Female
Fluorodeoxyglucose F18
Gene Expression Profiling
/ methods
Gene Expression Regulation
Gene Regulatory Networks
High-Throughput Nucleotide Sequencing
Humans
Male
Middle Aged
Positron Emission Tomography Computed Tomography
Positron-Emission Tomography
Protein Binding
Transcription Factors
Transcriptome
Tuberculosis, Pulmonary
/ blood
Workflow
Young Adult
RNA-sequencing
[18F]FDG PET-CT
gene expression
mixed-effect models
pathway analysis
transcription factor binding site
treatment response
tuberculosis
Journal
Frontiers in immunology
ISSN: 1664-3224
Titre abrégé: Front Immunol
Pays: Switzerland
ID NLM: 101560960
Informations de publication
Date de publication:
2020
2020
Historique:
received:
18
08
2020
accepted:
22
12
2020
entrez:
1
3
2021
pubmed:
2
3
2021
medline:
29
6
2021
Statut:
epublish
Résumé
Pulmonary tuberculosis (PTB) is characterized by lung granulomas, inflammation and tissue destruction. Here we used within-subject peripheral blood gene expression over time to correlate with the within-subject lung metabolic activity, as measured by positron emission tomography (PET) to identify biological processes and pathways underlying overall resolution of lung inflammation. We used next-generation RNA sequencing and [
Identifiants
pubmed: 33643286
doi: 10.3389/fimmu.2020.596173
pmc: PMC7902901
doi:
Substances chimiques
Biomarkers
0
Cell-Free Nucleic Acids
0
Transcription Factors
0
Fluorodeoxyglucose F18
0Z5B2CJX4D
Types de publication
Journal Article
Research Support, N.I.H., Intramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
596173Investigateurs
André G Loxton
(AG)
Annare Ellman
(A)
Bronwyn Smith
(B)
Caroline G G Beltran
(CGG)
Clifton E Barry
(CE)
David Alland
(D)
Friedrich Thienemann
(F)
Gerard Tromp
(G)
Gerhard Walzl
(G)
James M Warwick
(JM)
Jill Winter
(J)
Katharina Ronacher
(K)
Kim Stanley
(K)
Ilse Kant
(I)
Lani Thiart
(L)
Lance A Lucas
(LA)
Laura E Via
(LE)
Lori E Dodd
(LE)
Magdalena Kriel
(M)
Nelita Plessis Du
(N)
Patrick Dupont
(P)
Ray Y Chen
(RY)
Robert J Wilkinson
(RJ)
Shubhada Shenai
(S)
Stephanie Griffith-Richards
(S)
Stephanus T Malherbe
(ST)
Informations de copyright
Copyright © 2021 Odia, Malherbe, Meier, Maasdorp, Kleynhans, du Plessis, Loxton, Zak, Thompson, Duffy, Kuivaniemi, Ronacher, Winter, Walzl, Tromp and the Catalysis TB-Biomarker Consortium.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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