Development of the VISAGE enhanced tool and statistical models for epigenetic age estimation in blood, buccal cells and bones.
Adolescent
Adult
Aged
Aged, 80 and over
Aging
/ genetics
Amidohydrolases
/ genetics
Blood Chemical Analysis
Bone and Bones
/ chemistry
Child
Child, Preschool
CpG Islands
Cyclic Nucleotide Phosphodiesterases, Type 4
/ genetics
DNA Methylation
Edar-Associated Death Domain Protein
/ genetics
Epigenesis, Genetic
Fatty Acid Elongases
/ genetics
Female
High-Throughput Nucleotide Sequencing
Humans
Infant
Kruppel-Like Transcription Factors
/ genetics
Male
Middle Aged
Models, Statistical
Mouth Mucosa
/ chemistry
Multiplex Polymerase Chain Reaction
Sequence Analysis, DNA
Young Adult
DNA methylation
age prediction in blood and buccal cells
age prediction in bones
bisulfite amplicon MPS
epigenetic age prediction tool
Journal
Aging
ISSN: 1945-4589
Titre abrégé: Aging (Albany NY)
Pays: United States
ID NLM: 101508617
Informations de publication
Date de publication:
11 03 2021
11 03 2021
Historique:
received:
10
01
2021
accepted:
16
02
2021
pubmed:
13
3
2021
medline:
27
7
2021
entrez:
12
3
2021
Statut:
ppublish
Résumé
DNA methylation is known as a biomarker for age with applications in forensics. Here we describe the VISAGE (VISible Attributes through GEnomics) Consortium's enhanced tool for epigenetic age estimation in somatic tissues. The tool is based on eight DNA methylation markers (44 CpGs), bisulfite multiplex PCR followed by sequencing on the MiSeq FGx platform, and three statistical prediction models for blood, buccal cells and bones. The model for blood is based on six CpGs from
Identifiants
pubmed: 33707346
pii: 202783
doi: 10.18632/aging.202783
pmc: PMC7993733
doi:
Substances chimiques
EDARADD protein, human
0
ELOVL2 protein, human
0
Edar-Associated Death Domain Protein
0
KLF14 protein, human
0
Kruppel-Like Transcription Factors
0
Fatty Acid Elongases
EC 2.3.1.-
Cyclic Nucleotide Phosphodiesterases, Type 4
EC 3.1.4.17
PDE4C protein, human
EC 3.1.4.17
Amidohydrolases
EC 3.5.-
aspartoacylase
EC 3.5.1.15
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6459-6484Références
Forensic Sci Int. 2007 Jul 20;170(1):35-45
pubmed: 17071034
PLoS Genet. 2012;8(4):e1002629
pubmed: 22532803
Nucleic Acids Res. 1997 Nov 1;25(21):4422-6
pubmed: 9336479
PLoS One. 2015 Aug 06;10(8):e0135058
pubmed: 26247357
Sci Rep. 2017 Sep 5;7(1):10444
pubmed: 28874809
Genes (Basel). 2017 Dec 22;9(1):
pubmed: 29271907
Forensic Sci Int Genet. 2018 Nov;37:180-195
pubmed: 30176440
Forensic Sci Int Genet. 2015 Jul;17:129-136
pubmed: 25979242
PLoS One. 2011;6(6):e14821
pubmed: 21731603
Forensic Sci Int Genet. 2020 Sep;48:102322
pubmed: 32574993
Forensic Sci Int Genet. 2017 Nov;31:19-28
pubmed: 28841467
Int J Legal Med. 2020 May;134(3):953-961
pubmed: 32055939
Sci Rep. 2017 Jan 24;7:41328
pubmed: 28117430
Aging Cell. 2012 Dec;11(6):1132-4
pubmed: 23061750
Forensic Sci Int Genet. 2015 Jul;17:173-179
pubmed: 26026729
Nat Rev Genet. 2018 Jun;19(6):371-384
pubmed: 29643443
Forensic Sci Int Genet. 2018 Mar;33:17-23
pubmed: 29175600
Forensic Sci Int Genet. 2007 Mar;1(1):29-34
pubmed: 19083725
Aging (Albany NY). 2018 Apr 18;10(4):573-591
pubmed: 29676998
Bioinformatics. 2002 Nov;18(11):1427-31
pubmed: 12424112
Aging (Albany NY). 2011 Oct;3(10):1018-27
pubmed: 22067257
BMC Biol. 2020 Jun 24;18(1):71
pubmed: 32580727
BMC Res Notes. 2008 Jul 28;1:54
pubmed: 18710507
Int J Legal Med. 2020 Mar;134(2):451-459
pubmed: 31897670
Am J Phys Anthropol. 2016 Apr;159(4):585-95
pubmed: 26667772
Forensic Sci Int Genet. 2020 May;46:102261
pubmed: 32087494
Aging (Albany NY). 2016 May;8(5):1034-48
pubmed: 27249102
PLoS One. 2013 Jun 27;8(6):e67378
pubmed: 23826282
Nucleic Acids Res. 2005 Jan 13;33(1):e9
pubmed: 15653630
Mol Cell. 2013 Jan 24;49(2):359-367
pubmed: 23177740
Nucleic Acids Res. 1988 Feb 11;16(3):1215
pubmed: 3344216
Hum Mol Genet. 2014 Mar 1;23(5):1186-201
pubmed: 24163245
Forensic Sci Int Genet. 2016 Sep;24:65-74
pubmed: 27337627
Aging (Albany NY). 2018 Feb 15;10(2):241-252
pubmed: 29466246
Genome Biol. 2014 Feb 03;15(2):R24
pubmed: 24490752
Forensic Sci Int Genet. 2015 Jan;14:161-7
pubmed: 25450787
Forensic Sci Int Genet. 2018 Sep;36:50-59
pubmed: 29933125
Clin Epigenetics. 2017 Apr 4;9:31
pubmed: 28392841
Methods Mol Biol. 2009;507:241-55
pubmed: 18987819
Epigenetics. 2015;10(10):922-30
pubmed: 26280308
J Forensic Sci. 2020 Mar;65(2):465-470
pubmed: 31490551
Epigenetics Chromatin. 2018 May 30;11(1):25
pubmed: 29848354
Forensic Sci Int Genet. 2017 Jul;29:250-256
pubmed: 28511095
BMC Genomics. 2016 Feb 09;17:103
pubmed: 26861258
Biotechniques. 2004 Aug;37(2):226-31
pubmed: 15335214
Forensic Sci Int Genet. 2018 Jul;35:38-45
pubmed: 29631189
Forensic Sci Int Genet. 2017 Jul;29:118-125
pubmed: 28419903
Forensic Sci Int Genet. 2018 Sep;36:152-159
pubmed: 30031222
Aging (Albany NY). 2019 Jan 21;11(2):303-327
pubmed: 30669119
Forensic Sci Int Genet. 2017 May;28:225-236
pubmed: 28254385
Int J Legal Med. 2018 Jan;132(1):1-11
pubmed: 28725932
Nat Biotechnol. 2011 Jan;29(1):24-6
pubmed: 21221095
Forensic Sci Int Genet. 2020 May;46:102251
pubmed: 32006895
Forensic Sci Int. 2007 Mar 2;166(2-3):164-75
pubmed: 16829006
PLoS One. 2018 Jun 14;13(6):e0199091
pubmed: 29902267
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Forensic Sci Int Genet. 2018 Nov;37:215-226
pubmed: 30243148
Dtsch Arztebl Int. 2019 Dec 23;51-52(51-52):873-880
pubmed: 31941575
Genome Biol. 2013;14(10):R115
pubmed: 24138928
Epigenetics Chromatin. 2013 Oct 11;6(1):33
pubmed: 24279302
Forensic Sci Int Genet. 2019 Jan;38:1-8
pubmed: 30300865