Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
16 03 2021
Historique:
received: 25 11 2020
accepted: 03 03 2021
entrez: 17 3 2021
pubmed: 18 3 2021
medline: 16 12 2021
Statut: epublish

Résumé

Antifreeze proteins (AFPs) inhibit ice growth by adsorbing onto specific ice planes. Microbial AFPs show diverse antifreeze activity and ice plane specificity, while sharing a common molecular scaffold. To probe the molecular mechanisms responsible for AFP activity, we here characterized the antifreeze activity and crystal structure of TisAFP7 from the snow mold fungus Typhula ishikariensis. TisAFP7 exhibited intermediate activity, with the ability to bind the basal plane, compared with a hyperactive isoform TisAFP8 and a moderately active isoform TisAFP6. Analysis of the TisAFP7 crystal structure revealed a bound-water network arranged in a zigzag pattern on the surface of the protein's ice-binding site (IBS). While the three AFP isoforms shared the water network pattern, the network on TisAFP7 IBS was not extensive, which was likely related to its intermediate activity. Analysis of the TisAFP7 crystal structure also revealed the presence of additional water molecules that form a ring-like network surrounding the hydrophobic side chain of a crucial IBS phenylalanine, which might be responsible for the increased adsorption of AFP molecule onto the basal plane. Based on these observations, we propose that the extended water network and hydrophobic hydration at IBS together determine the TisAFP activity.

Identifiants

pubmed: 33727595
doi: 10.1038/s41598-021-85559-x
pii: 10.1038/s41598-021-85559-x
pmc: PMC7966756
doi:

Substances chimiques

Antifreeze Proteins 0
Fungal Proteins 0
Ice 0
Water 059QF0KO0R

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

5971

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Auteurs

N M-Mofiz Uddin Khan (NMU)

Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan.
Department of Chemistry, Dhaka University of Engineering and Technology, Gazipur Gazipur, 1700, Bangladesh.

Tatsuya Arai (T)

Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan.

Sakae Tsuda (S)

Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan.
Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1, Tsukisamu-Higashi, Toyohira, Sapporo, Hokkaido, 062-8517, Japan.
OPERANDO Open Innovation Laboratory, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, 305-8563, Japan.

Hidemasa Kondo (H)

Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan. h.kondo@aist.go.jp.
Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1, Tsukisamu-Higashi, Toyohira, Sapporo, Hokkaido, 062-8517, Japan. h.kondo@aist.go.jp.

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Classifications MeSH