Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Amino Acid Sequence
Antifreeze Proteins
/ chemistry
Basidiomycota
Binding Sites
Fungal Proteins
/ chemistry
Ice
Liquid Crystals
Molecular Docking Simulation
Molecular Dynamics Simulation
Mutation
Protein Binding
Protein Conformation
Protein Interaction Domains and Motifs
Structure-Activity Relationship
Water
/ chemistry
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
16 03 2021
16 03 2021
Historique:
received:
25
11
2020
accepted:
03
03
2021
entrez:
17
3
2021
pubmed:
18
3
2021
medline:
16
12
2021
Statut:
epublish
Résumé
Antifreeze proteins (AFPs) inhibit ice growth by adsorbing onto specific ice planes. Microbial AFPs show diverse antifreeze activity and ice plane specificity, while sharing a common molecular scaffold. To probe the molecular mechanisms responsible for AFP activity, we here characterized the antifreeze activity and crystal structure of TisAFP7 from the snow mold fungus Typhula ishikariensis. TisAFP7 exhibited intermediate activity, with the ability to bind the basal plane, compared with a hyperactive isoform TisAFP8 and a moderately active isoform TisAFP6. Analysis of the TisAFP7 crystal structure revealed a bound-water network arranged in a zigzag pattern on the surface of the protein's ice-binding site (IBS). While the three AFP isoforms shared the water network pattern, the network on TisAFP7 IBS was not extensive, which was likely related to its intermediate activity. Analysis of the TisAFP7 crystal structure also revealed the presence of additional water molecules that form a ring-like network surrounding the hydrophobic side chain of a crucial IBS phenylalanine, which might be responsible for the increased adsorption of AFP molecule onto the basal plane. Based on these observations, we propose that the extended water network and hydrophobic hydration at IBS together determine the TisAFP activity.
Identifiants
pubmed: 33727595
doi: 10.1038/s41598-021-85559-x
pii: 10.1038/s41598-021-85559-x
pmc: PMC7966756
doi:
Substances chimiques
Antifreeze Proteins
0
Fungal Proteins
0
Ice
0
Water
059QF0KO0R
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
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