The Future of Blood Testing Is the Immunome.

T-cell receptor repertoire adaptive immune receptor repertoire (AIRR) analyses antibody repertoire clinical laboratory testing diagnostic test immunome immunomics

Journal

Frontiers in immunology
ISSN: 1664-3224
Titre abrégé: Front Immunol
Pays: Switzerland
ID NLM: 101560960

Informations de publication

Date de publication:
2021
Historique:
received: 06 11 2020
accepted: 19 01 2021
entrez: 1 4 2021
pubmed: 2 4 2021
medline: 21 9 2021
Statut: epublish

Résumé

It is increasingly clear that an extraordinarily diverse range of clinically important conditions-including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions, aging, and cancers-leave telltale signatures in the millions of V(D)J-rearranged antibody and T cell receptor [TR per the Human Genome Organization (HUGO) nomenclature but more commonly known as TCR] genes collectively expressed by a person's B cells (antibodies) and T cells. We refer to these as the

Identifiants

pubmed: 33790897
doi: 10.3389/fimmu.2021.626793
pmc: PMC8005722
doi:

Substances chimiques

Receptors, Antigen, T-Cell 0

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

626793

Subventions

Organisme : NIAID NIH HHS
ID : R01 AI148747
Pays : United States

Investigateurs

Ramy A Arnaout (RA)
Rohit Arora (R)
Rachael Bashford-Rogers (R)
Felix Breden (F)
Syed Ahmad Chan Bukhari (SAC)
Brian Corrie (B)
Lindsay G Cowell (LG)
Sol Efroni (S)
Christopher Gooley (C)
Victor Greiff (V)
Jason Vander Heiden (JV)
Yoshinobu Koguchi (Y)
Ton Langerak (T)
Theam Soon Lim (TS)
Eline Luning Prak (EL)
Encarnita Mariotti-Ferrandiz (E)
Susanna Marquez (S)
Pieter Meysman (P)
Enkelejda Miho (E)
Keshav Motwani (K)
Nima Nouri (N)
Milena Pavlović (M)
Florian Rubelt (F)
Geir Kjetil Sandve (GK)
Nicholas Schwab (N)
Igor Snapkov (I)
Cinque Soto (C)
Ulrik Stervbo (U)
Johannes Trück (J)
Henk-Jan van den Ham (HJ)
Corey Watson (C)
Cédric R Weber (CR)

Informations de copyright

Copyright © 2021 Arnaout, Prak, Schwab, Rubelt and the Adaptive Immune Receptor Repertoire Community.

Déclaration de conflit d'intérêts

Author FR was employed by Roche Sequencing Solutions. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Nature. 2020 Aug;584(7821):437-442
pubmed: 32555388
Methods Inf Med. 2015;54(6):479-87
pubmed: 26395036
Immunity. 2020 Aug 18;53(2):442-455.e4
pubmed: 32668194
Nat Immunol. 2017 Nov 16;18(12):1274-1278
pubmed: 29144493
Science. 2017 Jul 28;357(6349):409-413
pubmed: 28596308
Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676):
pubmed: 26194753
Curr Opin Immunol. 2010 Aug;22(4):514-20
pubmed: 20537880
Science. 2015 May 15;348(6236):803-8
pubmed: 25837513
Biomedicines. 2020 Aug 31;8(9):
pubmed: 32878258
Leukemia. 2019 Sep;33(9):2241-2253
pubmed: 31243313
J Immunol. 2014 Mar 15;192(6):2689-98
pubmed: 24510963
Nat Rev Rheumatol. 2015 Mar;11(3):171-82
pubmed: 25536486
Nature. 2019 Oct;574(7776):122-126
pubmed: 31554970
Cell. 2020 Jul 9;182(1):73-84.e16
pubmed: 32425270
Med Care. 2013 Aug;51(8 Suppl 3):S87-91
pubmed: 23793052
Front Immunol. 2020 Sep 30;11:582010
pubmed: 33117392
Cell Host Microbe. 2020 Oct 7;28(4):516-525.e5
pubmed: 32941787
Front Immunol. 2020 Dec 15;11:605170
pubmed: 33384691
Nat Med. 2020 Jun;26(6):842-844
pubmed: 32398875
J Allergy Clin Immunol. 2018 Jun;141(6):2208-2219.e16
pubmed: 29505809
Hum Genet. 2020 Sep;139(9):1121-1130
pubmed: 31754893
Nat Immunol. 2015 Jul;16(7):755-65
pubmed: 26006014
Genome Med. 2016 Jun 03;8(1):60
pubmed: 27255379
Nat Struct Mol Biol. 2017 Apr;24(4):395-406
pubmed: 28250417
Nature. 2017 Jul 6;547(7661):94-98
pubmed: 28636589
Physiol Genomics. 2018 Aug 1;50(8):563-579
pubmed: 29727589
Nucleic Acids Res. 2020 Jan 8;48(D1):D1057-D1062
pubmed: 31588507
Front Immunol. 2019 Mar 18;10:435
pubmed: 30936866
Nat Commun. 2016 Jun 15;7:11881
pubmed: 27302887
Nature. 2019 Feb;566(7744):398-402
pubmed: 30760926
Immunology. 2018 Sep;155(1):3-17
pubmed: 29574826
Front Immunol. 2017 Nov 01;8:1418
pubmed: 29163494
MEDICC Rev. 2019 Apr-Jul;21(2-3):16-21
pubmed: 31373580
Blood. 2002 Aug 15;100(4):1410-6
pubmed: 12149225
J Immunol. 2019 Jan 15;202(2):368-373
pubmed: 30617118
Front Big Data. 2020 Jun 17;3:22
pubmed: 33693395
Immunobiology. 2014 Jul;219(7):487-96
pubmed: 24661720
EGEMS (Wash DC). 2015 Mar 10;3(1):1122
pubmed: 25992388
Front Immunol. 2018 Jun 27;9:1453
pubmed: 29997621
Elife. 2021 Jan 05;10:
pubmed: 33399535
Eur J Immunol. 2016 Feb;46(2):480-92
pubmed: 26614343
Front Immunol. 2018 Sep 28;9:2206
pubmed: 30323809
Nat Genet. 2017 May;49(5):659-665
pubmed: 28369038
Yearb Med Inform. 2017 Aug;26(1):16-23
pubmed: 28480469
Nat Rev Genet. 2019 Jun;20(6):341-355
pubmed: 30918369
Sci Immunol. 2020 Jul 15;5(49):
pubmed: 32669287
Genes Immun. 2012 Sep;13(6):469-73
pubmed: 22622198
Sci Transl Med. 2013 Feb 6;5(171):171ra19
pubmed: 23390249
Health Aff (Millwood). 2014 Jul;33(7):1155-62
pubmed: 25006141
Immunol Rev. 2018 Jul;284(1):24-41
pubmed: 29944754
Adv Exp Med Biol. 2019;1168:9-30
pubmed: 31713162
Health Aff (Millwood). 2007 Mar-Apr;26(2):w107-18
pubmed: 17259191
Immunity. 2020 Dec 15;53(6):1245-1257.e5
pubmed: 33326767
Nat Med. 2019 Jan;25(1):14-15
pubmed: 30617337
Genet Med. 2019 Nov;21(11):2569-2576
pubmed: 31036917
Cold Spring Harb Perspect Med. 2019 Mar 1;9(3):
pubmed: 29844223
Cell Rep. 2017 Apr 18;19(3):569-583
pubmed: 28423320
Nucleic Acids Res. 2019 Jul 2;47(W1):W502-W506
pubmed: 31114900

Auteurs

Ramy A Arnaout (RA)

Department of Pathology and Division of Clinical Informatics, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, United States.
Department of Pathology, Harvard Medical School, Boston, MA, United States.

Eline T Luning Prak (ETL)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States.

Nicholas Schwab (N)

Department of Neurology and Institute of Translational Neurology, University of Muenster, Muenster, Germany.

Florian Rubelt (F)

Roche Sequencing Solutions, Pleasanton, CA, United States.

Articles similaires

Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C

Classifications MeSH