Single-Molecule FRET of Membrane Transport Proteins.

FRET membrane proteins molecular dynamics single-molecule studies transmembrane transporter

Journal

Chembiochem : a European journal of chemical biology
ISSN: 1439-7633
Titre abrégé: Chembiochem
Pays: Germany
ID NLM: 100937360

Informations de publication

Date de publication:
02 09 2021
Historique:
revised: 03 05 2021
received: 08 03 2021
pubmed: 5 5 2021
medline: 11 2 2022
entrez: 4 5 2021
Statut: ppublish

Résumé

Uncovering the structure and function of biomolecules is a fundamental goal in structural biology. Membrane-embedded transport proteins are ubiquitous in all kingdoms of life. Despite structural flexibility, their mechanisms are typically studied by ensemble biochemical methods or by static high-resolution structures, which complicate a detailed understanding of their dynamics. Here, we review the recent progress of single molecule Förster Resonance Energy Transfer (smFRET) in determining mechanisms and timescales of substrate transport across membranes. These studies do not only demonstrate the versatility and suitability of state-of-the-art smFRET tools for studying membrane transport proteins but they also highlight the importance of membrane mimicking environments in preserving the function of these proteins. The current achievements advance our understanding of transport mechanisms and have the potential to facilitate future progress in drug design.

Identifiants

pubmed: 33945656
doi: 10.1002/cbic.202100106
pmc: PMC8453700
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

2657-2671

Subventions

Organisme : German-Israeli Foundation
ID : G-1288-207.9/2015
Organisme : BMBF
ID : 05K18YEA

Informations de copyright

© 2021 The Authors. Published by Wiley-VCH GmbH.

Références

Nature. 2010 Dec 9;468(7325):844-7
pubmed: 21048711
EMBO J. 2018 Nov 2;37(21):
pubmed: 30237313
Nature. 2013 Oct 3;502(7469):119-23
pubmed: 24091978
J Nanobiotechnology. 2013;11 Suppl 1:S2
pubmed: 24565277
Nature. 2019 Nov;575(7783):528-534
pubmed: 31723269
Biochemistry. 1975 Nov 4;14(22):4953-63
pubmed: 241393
Nat Commun. 2018 Jan 15;9(1):230
pubmed: 29335402
Mol Microbiol. 1996 Mar;19(6):1167-75
pubmed: 8730859
Curr Opin Biomed Eng. 2019 Dec;12:8-17
pubmed: 31989063
Curr Opin Chem Biol. 2015 Oct;28:164-73
pubmed: 26302384
Nat Chem Biol. 2018 Jul;14(7):715-722
pubmed: 29915236
Curr Opin Struct Biol. 2008 Feb;18(1):16-26
pubmed: 18221865
Nat Struct Mol Biol. 2014 Nov;21(11):1006-12
pubmed: 25282149
J Am Chem Soc. 2001 Dec 5;123(48):12123-5
pubmed: 11724636
Cell. 2015 Apr 23;161(3):438-449
pubmed: 25910204
Methods. 2010 Oct;52(2):192-200
pubmed: 20554047
Biometals. 2011 Jun;24(3):467-75
pubmed: 21210186
Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10089-10094
pubmed: 28878024
J Mol Microbiol Biotechnol. 2012;22(2):105-13
pubmed: 22627175
Nat Mater. 2019 Oct;18(10):1040
pubmed: 31537942
Phys Rev Lett. 1989 May 22;62(21):2535-2538
pubmed: 10040013
Biol Chem. 2009 Aug;390(8):815-34
pubmed: 19453273
Science. 2008 Dec 12;322(5908):1655-61
pubmed: 19074341
Curr Protoc Protein Sci. 2013 Sep 24;73:30.1.1-30.1.16
pubmed: 24510614
Biochem Soc Trans. 2015 Oct;43(5):889-93
pubmed: 26517899
Nature. 2005 Sep 8;437(7056):215-23
pubmed: 16041361
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):5962-5967
pubmed: 29784777
Methods Enzymol. 2003;372:65-86
pubmed: 14610807
Nat Commun. 2019 Mar 29;10(1):1438
pubmed: 30926805
Nature. 2015 Aug 27;524(7566):497-501
pubmed: 26258295
Elife. 2014 May 19;3:e02283
pubmed: 24842876
Trends Biochem Sci. 1993 Jan;18(1):13-20
pubmed: 8438231
Nature. 2013 Mar 14;495(7440):265-9
pubmed: 23455424
J Phys Chem B. 2020 May 7;124(18):3629-3635
pubmed: 32275442
Cell. 2015 Mar 12;160(6):1135-44
pubmed: 25768909
Curr Opin Chem Biol. 2014 Jun;20:103-11
pubmed: 24956235
J Lipid Res. 2001 Jul;42(7):1007-17
pubmed: 11441126
Structure. 2011 Nov 9;19(11):1549-61
pubmed: 22078555
Methods. 2013 Nov;64(1):36-42
pubmed: 23583888
Science. 2007 Mar 2;315(5816):1282-4
pubmed: 17255477
Chem Soc Rev. 2014 Feb 21;43(4):1044-56
pubmed: 24177677
Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19506-19512
pubmed: 31488718
Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3243-3248
pubmed: 29531052
Science. 2018 Jan 19;359(6373):
pubmed: 29348210
J Chem Phys. 2018 Mar 28;148(12):123303
pubmed: 29604826
Curr Opin Struct Biol. 2015 Jun;32:66-73
pubmed: 25757192
Curr Opin Struct Biol. 2004 Aug;14(4):426-31
pubmed: 15313236
Proteins. 1999 Jan 1;34(1):137-53
pubmed: 10336379
Chembiochem. 2021 Sep 2;22(17):2657-2671
pubmed: 33945656
Acta Crystallogr D Biol Crystallogr. 2009 Feb;65(Pt 2):186-92
pubmed: 19171974
Curr Opin Struct Biol. 2008 Aug;18(4):406-11
pubmed: 18495472
Nature. 2009 Dec 17;462(7275):880-5
pubmed: 19924125
Bioconjug Chem. 2008 Mar;19(3):786-91
pubmed: 18275130
Phys Chem Chem Phys. 2011 Feb 7;13(5):1857-71
pubmed: 21218223
Nature. 2011 Jun 2;474(7349):109-13
pubmed: 21516104
Nature. 2007 Jan 25;445(7126):387-93
pubmed: 17230192
Nature. 2004 Nov 18;432(7015):361-8
pubmed: 15448704
J Mol Biol. 2011 Nov 18;414(1):75-85
pubmed: 21983341
Bioconjug Chem. 2016 Sep 21;27(9):2176-87
pubmed: 27501274
Nat Methods. 2016 Apr;13(4):345-51
pubmed: 26950744
J Am Chem Soc. 2013 Sep 25;135(38):14040-3
pubmed: 24010673
Nat Rev Mol Cell Biol. 2002 Dec;3(12):906-18
pubmed: 12461557
EMBO J. 2021 Jan 4;40(1):e105415
pubmed: 33185289
Nature. 2020 May;581(7808):316-322
pubmed: 32433612
Curr Opin Struct Biol. 2013 Feb;23(1):36-47
pubmed: 23312353
J Neurochem. 2010 Jul;114(2):565-75
pubmed: 20477940
Angew Chem Int Ed Engl. 2010 May 3;49(20):3520-3
pubmed: 20391447
Sci Adv. 2020 May 29;6(22):eaaz1949
pubmed: 32523985
Nature. 2011 Dec 18;481(7379):45-50
pubmed: 22178925
FEBS Lett. 2004 Mar 26;562(1-3):193-6
pubmed: 15044024
Nature. 2004 Oct 14;431(7010):811-8
pubmed: 15483603
Nature. 2013 Oct 3;502(7469):114-8
pubmed: 23792560
Anal Biochem. 2005 May 1;340(1):154-64
pubmed: 15802141
Nat Commun. 2015 Jan 19;6:6112
pubmed: 25598322
Biochemistry. 2020 Jul 21;59(28):2650-2659
pubmed: 32567840
Biochemistry. 2008 Aug 5;47(31):7980-2
pubmed: 18616286
J Phys Chem B. 2009 Aug 6;113(31):10965-73
pubmed: 19588948
Biochim Biophys Acta. 2004 Nov 3;1666(1-2):2-18
pubmed: 15519305
J Am Chem Soc. 2013 Feb 6;135(5):1919-25
pubmed: 23294159
Biochim Biophys Acta. 2008 Sep;1778(9):1814-38
pubmed: 17942072
Nat Commun. 2018 Oct 8;9(1):4151
pubmed: 30297844
Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3197-202
pubmed: 12612345
Acta Physiol (Oxf). 2006 May-Jun;187(1-2):141-7
pubmed: 16734750
J Phys Chem B. 2018 Dec 13;122(49):11460-11467
pubmed: 30184429
Chem Rev. 2014 Jul 9;114(13):6632-60
pubmed: 24725176
Nature. 2000 Jun 8;405(6787):647-55
pubmed: 10864315
Annu Rev Biophys. 2013;42:361-92
pubmed: 23451886
Nature. 2004 Feb 26;427(6977):803-7
pubmed: 14985752
Methods Mol Biol. 2021;2199:151-156
pubmed: 33125649
EMBO J. 2009 May 6;28(9):1332-40
pubmed: 19300437
J Phys Chem B. 2018 Dec 13;122(49):11030-11038
pubmed: 30088929
Curr Opin Chem Biol. 2015 Oct;28:123-30
pubmed: 26253346
Annu Rev Biophys. 2011;40:243-66
pubmed: 21351879
Cold Spring Harb Protoc. 2015 Nov 02;2015(11):979-87
pubmed: 26527772
Insect Biochem Mol Biol. 2014 Feb;45:89-110
pubmed: 24291285
Biochemistry. 2019 Nov 26;58(47):4744-4750
pubmed: 31120736
Nature. 2015 Feb 5;518(7537):68-73
pubmed: 25652997
Nature. 2000 Feb 24;403(6772):898-901
pubmed: 10706288
Nat Commun. 2016 Oct 26;7:13245
pubmed: 27782132
Biochemistry. 2004 Apr 13;43(14):4400-16
pubmed: 15065885
Front Pharmacol. 2017 Mar 23;8:151
pubmed: 28386229
J Biol Chem. 1982 Feb 10;257(3):1131-3
pubmed: 7035444
J Phys Chem B. 2016 Dec 29;120(51):13065-13075
pubmed: 27977207
Phys Chem Chem Phys. 2018 Jan 31;20(5):3054-3062
pubmed: 28721412
Biochim Biophys Acta. 2011 Feb;1807(2):167-88
pubmed: 21029721
Curr Opin Struct Biol. 2001 Apr;11(2):201-7
pubmed: 11297928
FEBS Lett. 2021 Mar;595(6):717-734
pubmed: 33314056
EMBO J. 2008 Jan 9;27(1):17-26
pubmed: 18059473
Nature. 2002 Oct 17;419(6908):743-7
pubmed: 12384704
Nat Chem Biol. 2020 Sep;16(9):1006-1012
pubmed: 32514183
Elife. 2020 May 27;9:
pubmed: 32458799
Cell. 2014 Nov 20;159(5):995-1014
pubmed: 25416941
J Physiol. 2015 Sep 15;593(18):4129-38
pubmed: 26148215
J Biol Chem. 1995 Mar 24;270(12):6856-63
pubmed: 7896833
Nano Rev. 2015 Feb 25;6:25661
pubmed: 25721341
Annu Rev Biophys. 2016 Jul 5;45:207-31
pubmed: 27145874
J Biol Chem. 2000 Feb 25;275(8):5400-8
pubmed: 10681515
Biochem Soc Trans. 2011 Jun;39(3):767-74
pubmed: 21599647
Nat Struct Mol Biol. 2016 Jun;23(6):481-6
pubmed: 27273631
Nat Struct Mol Biol. 2004 Oct;11(10):918-26
pubmed: 15452563
Structure. 2017 Dec 5;25(12):1916-1927
pubmed: 29174494
Nat Rev Drug Discov. 2006 Dec;5(12):993-6
pubmed: 17139284
Structure. 2018 Feb 6;26(2):345-355.e5
pubmed: 29413323
Elife. 2020 Apr 20;9:
pubmed: 32310757
Proc Natl Acad Sci U S A. 2012 May 29;109(22):E1437-43
pubmed: 22562794
Science. 2004 Jun 11;304(5677):1672-5
pubmed: 15192230
Elife. 2020 Nov 06;9:
pubmed: 33155546
Methods. 2007 Apr;41(4):388-97
pubmed: 17367711
Sci Adv. 2020 Nov 18;6(47):
pubmed: 33208356
Structure. 2016 Jun 7;24(6):956-64
pubmed: 27161976
Nat Struct Biol. 2000 Sep;7(9):724-9
pubmed: 10966638
Biochemistry. 2001 Nov 6;40(44):13288-301
pubmed: 11683639
Biochem Soc Trans. 2016 Jun 15;44(3):905-15
pubmed: 27284059
Nat Commun. 2015 Oct 15;6:8624
pubmed: 26468675
Biochemistry. 2017 Apr 11;56(14):2031-2041
pubmed: 28362086
J Phys Chem B. 2010 Jun 17;114(23):7983-95
pubmed: 20486698
Cell. 2002 Mar 8;108(5):599-614
pubmed: 11893332
Nature. 2007 Dec 13;450(7172):1036-42
pubmed: 18075584
Nat Struct Mol Biol. 2013 May;20(5):634-40
pubmed: 23563139
Nat Rev Mol Cell Biol. 2016 Feb;17(2):123-32
pubmed: 26758938
Methods Appl Fluoresc. 2016 Nov 17;4(4):042003
pubmed: 28192291
Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12640-5
pubmed: 17502603
Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5213-8
pubmed: 24706910
Proc Natl Acad Sci U S A. 1996 Jun 25;93(13):6264-8
pubmed: 8692803
EMBO J. 2006 Jun 7;25(11):2305-14
pubmed: 16710301
Nature. 1966 Aug 27;211(5052):969-70
pubmed: 5968307
Nat Protoc. 2016 Jul;11(7):1149-62
pubmed: 27254461
Curr Opin Struct Biol. 2001 Aug;11(4):397-402
pubmed: 11495729
Curr Opin Struct Biol. 2018 Feb;48:30-39
pubmed: 29080467
J Biol Chem. 2012 Jan 6;287(2):1112-27
pubmed: 22086917
Q Rev Biophys. 2010 Nov;43(4):501-66
pubmed: 20809990
Q Rev Biophys. 2016 Jan;49:e15
pubmed: 27659286
J Am Chem Soc. 2009 Aug 26;131(33):11644-5
pubmed: 19645470
Methods Mol Biol. 2012;896:21-45
pubmed: 22821515
Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):395-404
pubmed: 31862713
Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8936-41
pubmed: 15175430
Protein Sci. 1998 Apr;7(4):1029-38
pubmed: 9568909
Cell. 2017 Mar 23;169(1):96-107.e12
pubmed: 28340354
J Biol Chem. 2010 Aug 20;285(34):26710-8
pubmed: 20551331
Angew Chem Int Ed Engl. 2020 Oct 19;59(43):19121-19128
pubmed: 32744783
Nat Struct Mol Biol. 2012 Feb 12;19(3):355-7
pubmed: 22343718
Annu Rev Biophys. 2015;44:257-83
pubmed: 26098515
Proc Natl Acad Sci U S A. 2012 May 15;109(20):7747-52
pubmed: 22550169
Chem Rev. 2008 May;108(5):1654-68
pubmed: 18393466
Elife. 2018 Sep 26;7:
pubmed: 30255846
Phys Rev Lett. 1990 Nov 19;65(21):2716-2719
pubmed: 10042674
Biochim Biophys Acta. 2004 Nov 3;1666(1-2):105-17
pubmed: 15519311
Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15947-15956
pubmed: 31324743
Biochim Biophys Acta. 2014 Jul;1838(7):1817-22
pubmed: 24680655
Chemphyschem. 2005 May;6(5):858-70
pubmed: 15884068
Nat Methods. 2008 Jun;5(6):507-16
pubmed: 18511918
Proc Natl Acad Sci U S A. 1967 Aug;58(2):719-26
pubmed: 5233469
Annu Rev Biochem. 2016 Jun 2;85:543-72
pubmed: 27023848
Nature. 2014 Oct 23;514(7523):518-22
pubmed: 25132545
Chemistry. 2017 Oct 12;23(57):14267-14277
pubmed: 28799205
Nature. 2014 Nov 20;515(7527):448-452
pubmed: 25186729
Biochem Soc Trans. 2015 Oct;43(5):1041-7
pubmed: 26517920
Physiology (Bethesda). 2009 Dec;24:377-86
pubmed: 19996368
Nat Struct Mol Biol. 2012 Mar 25;19(4):395-402
pubmed: 22447242
J Am Chem Soc. 2008 Dec 31;130(52):17664-5
pubmed: 19108697
Structure. 2018 Aug 7;26(8):1072-1079.e4
pubmed: 29937358
Colloids Surf B Biointerfaces. 2015 Dec 1;136:514-26
pubmed: 26454541
Nat Struct Mol Biol. 2014 Jan;21(1):43-8
pubmed: 24317491
Curr Opin Plant Biol. 2015 Jun;25:53-62
pubmed: 25988582
Nature. 2010 May 13;465(7295):188-93
pubmed: 20463731
J Phys Chem B. 2007 Aug 30;111(34):10253-62
pubmed: 17676789
Nat Chem. 2014 May;6(5):393-403
pubmed: 24755590
Nature. 2019 Apr;568(7750):127-130
pubmed: 30867591
Biophys J. 2019 Jun 18;116(12):2296-2303
pubmed: 31146923

Auteurs

Kim Bartels (K)

Centre for Structural Systems Biology (CSSB), DESY and European Molecular Biology Laboratory Hamburg, Notkestrasse 85, 22607, Hamburg, Germany.

Tanya Lasitza-Male (T)

Department of Structural Biology, Weizmann Institute of Science, Herzl St. 234, 7610001, Rehovot, Israel.

Hagen Hofmann (H)

Department of Structural Biology, Weizmann Institute of Science, Herzl St. 234, 7610001, Rehovot, Israel.

Christian Löw (C)

Centre for Structural Systems Biology (CSSB), DESY and European Molecular Biology Laboratory Hamburg, Notkestrasse 85, 22607, Hamburg, Germany.

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