Physical Characterization of Triolein and Implications for Its Role in Lipid Droplet Biogenesis.


Journal

The journal of physical chemistry. B
ISSN: 1520-5207
Titre abrégé: J Phys Chem B
Pays: United States
ID NLM: 101157530

Informations de publication

Date de publication:
01 07 2021
Historique:
pubmed: 19 6 2021
medline: 5 8 2021
entrez: 18 6 2021
Statut: ppublish

Résumé

Lipid droplets (LDs) are neutral lipid-storing organelles surrounded by a phospholipid (PL) monolayer. At present, how LDs are formed in the endoplasmic reticulum (ER) bilayer is poorly understood. In this study, we present a revised all-atom (AA) triolein (TG) model, the main constituent of the LD core, and characterize its properties in a bilayer membrane to demonstrate the implications of its behavior in LD biogenesis. In bilayer simulations, TG resides at the surface, adopting PL-like conformations (denoted in this work as SURF-TG). Free energy sampling simulation results estimate the barrier for TG relocating from the bilayer surface to the bilayer center to be ∼2 kcal/mol in the absence of an oil lens. SURF-TG is able to modulate membrane properties by increasing PL ordering, decreasing bending modulus, and creating local negative curvature. The other neutral lipid, dioleoyl-glycerol (DAG), also reduces the membrane bending modulus and populates negative curvature regions. A phenomenological coarse-grained (CG) model is also developed to observe larger-scale SURF-TG-mediated membrane deformation. CG simulations confirm that TG nucleates between the bilayer leaflets at a critical concentration when SURF-TG is evenly distributed. However, when one monolayer contains more SURF-TG, the membrane bends toward the other leaflet, followed by TG nucleation if a concentration is higher than the critical threshold. The central conclusion of this study is that SURF-TG is a negative curvature inducer, as well as a membrane modulator. To this end, a model is proposed in which the accumulation of SURF-TG in the luminal leaflet bends the ER bilayer toward the cytosolic side, followed by TG nucleation.

Identifiants

pubmed: 34139844
doi: 10.1021/acs.jpcb.1c03559
pmc: PMC8314861
mid: NIHMS1726401
doi:

Substances chimiques

Lipid Bilayers 0
Phospholipids 0
Triolein 122-32-7

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

6874-6888

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM063796
Pays : United States

Références

Biophys J. 2008 Jan 1;94(1):117-24
pubmed: 17827241
Curr Biol. 2020 Jul 6;30(13):2481-2494.e6
pubmed: 32442467
Biophys J. 2017 Apr 11;112(7):1417-1430
pubmed: 28402884
Chem Rev. 2019 May 8;119(9):5607-5774
pubmed: 30859819
Biochim Biophys Acta Biomembr. 2017 Feb;1859(2):135-145
pubmed: 27814978
J Comput Chem. 2005 Dec;26(16):1701-18
pubmed: 16211538
Dev Cell. 2019 Dec 2;51(5):551-563.e7
pubmed: 31708432
Biochemistry. 2001 Sep 4;40(35):10522-31
pubmed: 11523994
J Phys Chem B. 2015 Dec 10;119(49):15263-74
pubmed: 26560961
Dev Cell. 2019 Jul 1;50(1):25-42.e7
pubmed: 31155466
Nat Rev Mol Cell Biol. 2013 Dec;14(12):775-86
pubmed: 24220094
J Comput Chem. 2011 Jul 30;32(10):2319-27
pubmed: 21500218
Cell. 2009 Nov 25;139(5):855-60
pubmed: 19945371
J Chem Theory Comput. 2016 Oct 11;12(10):5157-5169
pubmed: 27598403
Biophys J. 1994 Oct;67(4):1603-11
pubmed: 7819492
PLoS Biol. 2021 Jan 22;19(1):e3000998
pubmed: 33481779
J Phys Chem B. 2005 Feb 24;109(7):2469-73
pubmed: 16851243
Biophys J. 2019 Aug 6;117(3):553-562
pubmed: 31349990
J Phys Chem B. 2009 Apr 2;113(13):4443-55
pubmed: 19267467
Curr Opin Cell Biol. 2016 Aug;41:25-32
pubmed: 27062546
Chem Rev. 2019 May 8;119(9):5954-5997
pubmed: 30747524
J Chem Phys. 2008 Jun 28;128(24):244115
pubmed: 18601325
Science. 2014 Aug 8;345(6197):693-7
pubmed: 25104391
Science. 2020 Nov 27;370(6520):
pubmed: 33243857
Biochemistry. 1992 Mar 24;31(11):2856-64
pubmed: 1550812
Biophys J. 2013 Feb 5;104(3):575-84
pubmed: 23442908
Nature. 2020 May;581(7808):323-328
pubmed: 32433611
Elife. 2021 Feb 01;10:
pubmed: 33522484
Biochemistry. 1996 Jul 30;35(30):9917-24
pubmed: 8703966
J Chem Theory Comput. 2019 Jun 11;15(6):3854-3867
pubmed: 31002505
Phys Rev A Gen Phys. 1985 Mar;31(3):1695-1697
pubmed: 9895674
J Chem Theory Comput. 2016 Jan 12;12(1):405-13
pubmed: 26631602
Elife. 2015 Apr 21;4:
pubmed: 25898003
J Comput Chem. 2009 Oct;30(13):2157-64
pubmed: 19229944
Dev Cell. 2018 Jan 08;44(1):73-86.e4
pubmed: 29316443
Biochim Biophys Acta. 2016 Aug;1861(8 Pt B):847-861
pubmed: 26747646
J Phys Chem B. 2014 Sep 4;118(35):10335-40
pubmed: 25133683
J Chem Phys. 2008 Oct 14;129(14):144108
pubmed: 19045135
Chem Phys Lipids. 2015 Nov;192:60-74
pubmed: 26238099
J Phys Chem B. 2010 Mar 11;114(9):3276-84
pubmed: 20151713
Prog Lipid Res. 2015 Jul;59:147-71
pubmed: 26165797
Nat Rev Mol Cell Biol. 2019 Mar;20(3):137-155
pubmed: 30523332
J Am Chem Soc. 2014 Jan 15;136(2):725-32
pubmed: 24345334
J Chem Theory Comput. 2021 Mar 9;17(3):1562-1580
pubmed: 33620214
Biophys J. 1997 Jul;73(1):267-76
pubmed: 9199791
Elife. 2015 Mar 25;4:
pubmed: 25806685
J Phys Chem B. 2014 Sep 25;118(38):11145-51
pubmed: 25188363
Annu Rev Cell Dev Biol. 2017 Oct 6;33:491-510
pubmed: 28793795
J Mol Biol. 2020 Aug 21;432(18):5023-5042
pubmed: 32234309
J Chem Theory Comput. 2014 Dec 9;10(12):5265-75
pubmed: 26583210
Nat Rev Mol Cell Biol. 2018 May;19(5):281-296
pubmed: 29410529
Dev Cell. 2020 Aug 24;54(4):471-487.e7
pubmed: 32730754
Biophys J. 2021 Feb 16;120(4):607-617
pubmed: 33460598
Elife. 2016 Aug 26;5:
pubmed: 27564575
Biochemistry. 1975 Jun 3;14(11):2283-7
pubmed: 1173551
J Chem Theory Comput. 2020 Nov 10;16(11):6823-6842
pubmed: 32975948
J Comput Chem. 2008 Aug;29(11):1859-65
pubmed: 18351591
J Chem Theory Comput. 2021 Mar 9;17(3):1581-1595
pubmed: 33620194
PLoS One. 2010 Sep 22;5(9):e12811
pubmed: 20877640
Proc Natl Acad Sci U S A. 2019 Dec 17;116(51):25649-25658
pubmed: 31757855
Curr Opin Cell Biol. 2014 Aug;29:39-45
pubmed: 24736091
J Chem Theory Comput. 2008 Jan;4(1):116-22
pubmed: 26619985
J Chem Theory Comput. 2018 Feb 13;14(2):948-958
pubmed: 29268012
Biophys J. 2009 Jul 8;97(1):50-8
pubmed: 19580743
Chem Rev. 2019 May 8;119(9):5775-5848
pubmed: 30758191
Annu Rev Biochem. 2012;81:687-714
pubmed: 22524315
Biophys J. 2013 May 21;104(10):2202-11
pubmed: 23708360
Curr Opin Struct Biol. 2012 Apr;22(2):175-86
pubmed: 22402497
Biophys J. 2008 Sep;95(5):2356-67
pubmed: 18502796
Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11226-11231
pubmed: 27655892
J Chem Theory Comput. 2013 Jan 8;9(1):750-765
pubmed: 25100925
Biophys J. 2000 Jul;79(1):328-39
pubmed: 10866959
Biophys J. 2013 Feb 5;104(3):585-93
pubmed: 23442909
Biophys J. 1994 Jun;66(6):2127-38
pubmed: 8075346
J Chem Theory Comput. 2018 Dec 11;14(12):6159-6174
pubmed: 30354110
J Chem Theory Comput. 2017 Mar 14;13(3):1010-1022
pubmed: 28112956
Biophys J. 2011 May 4;100(9):2104-11
pubmed: 21539777
J Chem Theory Comput. 2006 May;2(3):637-48
pubmed: 26626671
Nature. 2020 May;581(7808):329-332
pubmed: 32433610
Biophys J. 2018 Feb 6;114(3):631-640
pubmed: 29414709
J Chem Phys. 2004 Jan 8;120(2):1059-71
pubmed: 15267943
J Chem Theory Comput. 2018 Apr 10;14(4):2180-2197
pubmed: 29481754
Chem Rev. 2019 May 8;119(9):6184-6226
pubmed: 30623647
Faraday Discuss. 2013;161:591-611
pubmed: 23805759
Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):E8595-E8603
pubmed: 30150411
Biophys J. 2020 Nov 17;119(10):1958-1969
pubmed: 33120015
J Phys Chem B. 2010 Jun 17;114(23):7830-43
pubmed: 20496934
Proc Natl Acad Sci U S A. 1981 Nov;78(11):6878-82
pubmed: 6947263
Proc Natl Acad Sci U S A. 2021 Mar 9;118(10):
pubmed: 33674387
J Chem Theory Comput. 2013 May 14;9(5):2466-80
pubmed: 26583735
J Chem Phys. 2008 Jun 28;128(24):244114
pubmed: 18601324
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jul;72(1 Pt 1):011915
pubmed: 16090009
J Chem Phys. 2007 Jan 7;126(1):014101
pubmed: 17212484
J Chem Theory Comput. 2014 Sep 9;10(9):3626-33
pubmed: 26588507
J Comput Chem. 2014 Oct 15;35(27):1997-2004
pubmed: 25130509
J Phys Chem B. 2021 Jun 3;125(21):5572-5586
pubmed: 34014091
Biophys J. 2013 Aug 6;105(3):711-9
pubmed: 23931319
Biochim Biophys Acta. 1974 Oct 29;367(2):165-76
pubmed: 4371833
Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20396-401
pubmed: 24284177
Endocrinology. 2008 Mar;149(3):942-9
pubmed: 18202123
J Chem Theory Comput. 2019 Mar 12;15(3):2087-2100
pubmed: 30702887

Auteurs

Siyoung Kim (S)

Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States.

Gregory A Voth (GA)

Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.

Articles similaires

Animals Natural Killer T-Cells Mice Adipose Tissue Lipid Metabolism
1.00
Plasmodesmata Endoplasmic Reticulum Arabidopsis Cytokinesis Arabidopsis Proteins

Molecular probes for tracking lipid droplet membrane dynamics.

Lingxiu Kong, Qingjie Bai, Cuicui Li et al.
1.00
Lipid Droplets Molecular Probes Humans Membrane Proteins Animals
1.00
Animals Inflammation Mice Membrane Proteins Humans

Classifications MeSH