Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression.


Journal

Journal of molecular biology
ISSN: 1089-8638
Titre abrégé: J Mol Biol
Pays: Netherlands
ID NLM: 2985088R

Informations de publication

Date de publication:
15 01 2022
Historique:
received: 06 05 2021
revised: 01 07 2021
accepted: 06 07 2021
pubmed: 17 7 2021
medline: 29 1 2022
entrez: 16 7 2021
Statut: ppublish

Résumé

Our understanding of the spatiotemporal regulation of eukaryotic gene expression has recently been greatly stimulated by the findings that many of the regulators of chromatin, transcription, and RNA processing form biomolecular condensates often assembled through liquid-liquid phase separation. Increasing number of reports suggest that these condensates functionally regulate gene expression, largely by concentrating the relevant biomolecules in the liquid-like micro-compartments. However, it remains poorly understood how the physicochemical properties, especially the material properties, of the condensates regulate gene expression activity. In this review, we discuss current data on various nuclear condensates and their biophysical properties with the underlying molecular interactions, and how they may functionally impact gene expression at the level of chromatin organization and activities, transcription, and RNA processing.

Identifiants

pubmed: 34271007
pii: S0022-2836(21)00380-6
doi: 10.1016/j.jmb.2021.167151
pmc: PMC9012237
mid: NIHMS1790665
pii:
doi:

Substances chimiques

Chromatin 0
Nuclear Proteins 0
RNA Polymerase II EC 2.7.7.-

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

167151

Subventions

Organisme : NCI NIH HHS
ID : R21 CA257936
Pays : United States

Informations de copyright

Copyright © 2021 Elsevier Ltd. All rights reserved.

Références

Trends Biochem Sci. 2018 Feb;43(2):81-94
pubmed: 29258725
Cell. 2018 Apr 19;173(3):677-692.e20
pubmed: 29677512
Nature. 2020 May;581(7807):209-214
pubmed: 32405004
Nature. 2012 Mar 07;483(7389):336-40
pubmed: 22398450
Trends Genet. 2011 Aug;27(8):295-306
pubmed: 21680045
Open Biol. 2019 Oct 31;9(10):190167
pubmed: 31615334
Cell. 2017 Jul 13;170(2):312-323.e10
pubmed: 28708999
Cell. 2016 May 19;165(5):1055-1066
pubmed: 27203110
Nature. 2019 Aug;572(7770):543-548
pubmed: 31391587
Biophys J. 2018 May 22;114(10):2262-2270
pubmed: 29628210
Nat Chem Biol. 2021 Jun;17(6):693-702
pubmed: 34035521
Elife. 2021 Sep 06;10:
pubmed: 34487489
Nature. 2017 Jul 13;547(7662):241-245
pubmed: 28636597
Cell. 2020 Oct 15;183(2):490-502.e18
pubmed: 33002410
J Mol Biol. 2018 Nov 2;430(23):4636-4649
pubmed: 30099026
Proc Natl Acad Sci U S A. 2020 Dec 29;117(52):33254-33262
pubmed: 33318217
Cell Res. 2020 May;30(5):393-407
pubmed: 32111972
Elife. 2018 Feb 09;7:
pubmed: 29424691
Biochem Soc Trans. 2020 Dec 18;48(6):2557-2564
pubmed: 33170209
Science. 2018 Jul 27;361(6400):
pubmed: 29930091
Cell. 2018 Jul 26;174(3):744-757.e24
pubmed: 29887377
Nat Genet. 2020 Dec;52(12):1271-1281
pubmed: 33257899
Nat Cell Biol. 2020 Oct;22(10):1211-1222
pubmed: 32895492
Cell. 2018 Nov 29;175(6):1481-1491.e13
pubmed: 30500535
Mol Cell. 2021 Apr 15;81(8):1682-1697.e7
pubmed: 33651988
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5883-5894
pubmed: 32132204
Mol Cell. 2020 Aug 6;79(3):459-471.e4
pubmed: 32553192
Nat Rev Mol Cell Biol. 2017 May;18(5):285-298
pubmed: 28225081
Nature. 2019 Nov;575(7782):390-394
pubmed: 31618757
Mol Cell. 2018 May 17;70(4):730-744.e6
pubmed: 29706538
Nature. 2017 Jul 13;547(7662):236-240
pubmed: 28636604
J Mol Biol. 2004 Mar 26;337(3):635-45
pubmed: 15019783
Cell. 2020 Dec 23;183(7):1772-1784.e13
pubmed: 33326747
Cell. 2017 Sep 21;171(1):163-178.e19
pubmed: 28844694
J Mol Biol. 2021 Jun 11;433(12):166724
pubmed: 33248138
Cell. 2019 Oct 3;179(2):470-484.e21
pubmed: 31543265
Mol Cell. 2020 Jan 16;77(2):368-383.e7
pubmed: 31677973
Cell. 2018 Dec 13;175(7):1842-1855.e16
pubmed: 30449618
J Phys Chem B. 2021 Apr 15;125(14):3441-3451
pubmed: 33661634
Sci Adv. 2021 Feb 10;7(7):
pubmed: 33568486
Science. 2020 Feb 7;367(6478):694-699
pubmed: 32029630
J Mol Biol. 2021 Jun 11;433(12):166624
pubmed: 32805219
Nature. 2020 Nov;587(7832):145-151
pubmed: 32908311
Sci Adv. 2020 Apr 01;6(14):eaay4858
pubmed: 32270036
Cell. 2020 Dec 23;183(7):1742-1756
pubmed: 33357399
Cell. 2016 Jul 28;166(3):651-663
pubmed: 27374333
J Biol Chem. 2019 Feb 1;294(5):1451-1463
pubmed: 30514760
Science. 2018 Jul 27;361(6400):412-415
pubmed: 29930094
Mol Cell. 2020 Jan 2;77(1):82-94.e4
pubmed: 31630970
Protein Cell. 2021 Apr;12(4):297-304
pubmed: 32935279
Mol Cell. 2019 Oct 17;76(2):295-305
pubmed: 31604601
J Biol Chem. 2016 Mar 25;291(13):6696-705
pubmed: 26851279
Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31123-31133
pubmed: 33229560
Cell. 2017 Jan 12;168(1-2):159-171.e14
pubmed: 28041848
Cell. 2018 Apr 19;173(3):693-705.e22
pubmed: 29677513
Science. 2017 Sep 22;357(6357):
pubmed: 28935776
Cold Spring Harb Perspect Biol. 2011 Feb 01;3(2):
pubmed: 20926517
Curr Opin Cell Biol. 2020 Jun;64:112-123
pubmed: 32474299
Nature. 2019 May;569(7755):265-269
pubmed: 31043738
Nat Cell Biol. 2021 Jun;23(6):587-594
pubmed: 34108660
Trends Biochem Sci. 2020 Nov;45(11):961-977
pubmed: 32684431
Nat Struct Mol Biol. 2019 Mar;26(3):193-203
pubmed: 30833784
Science. 2021 Feb 5;371(6529):
pubmed: 33335017
Mol Cell. 2019 Aug 8;75(3):549-561.e7
pubmed: 31398323
J Am Chem Soc. 2020 Jan 15;142(2):874-883
pubmed: 31845799
Nat Rev Mol Cell Biol. 2021 Mar;22(3):165-182
pubmed: 32873929
Science. 2020 Oct 2;370(6512):56-60
pubmed: 33004511
Cell. 2018 Apr 19;173(3):720-734.e15
pubmed: 29677515
Cell. 2017 Jul 13;170(2):324-339.e23
pubmed: 28709000
Dev Cell. 2020 Oct 12;55(1):84-96
pubmed: 33049213
Nature. 2020 Oct;586(7829):440-444
pubmed: 32698189
Cell. 2012 May 11;149(4):753-67
pubmed: 22579281
Cell. 2013 Nov 21;155(5):1049-1060
pubmed: 24267890
Chem Rev. 2013 Nov 13;113(11):8683-705
pubmed: 23597155
Nature. 2020 Mar;579(7800):592-597
pubmed: 32214243
Annu Rev Cell Dev Biol. 2014;30:39-58
pubmed: 25288112
Science. 2018 Jul 27;361(6400):
pubmed: 29930090
Cell. 2018 Jul 26;174(3):688-699.e16
pubmed: 29961577
Cell. 2018 Apr 19;173(3):706-719.e13
pubmed: 29677514
Nat Commun. 2019 Oct 25;10(1):4890
pubmed: 31653829
Biochim Biophys Acta Gene Regul Mech. 2020 Dec;1863(12):194641
pubmed: 33017669
Trends Cell Biol. 2021 Aug;31(8):671-685
pubmed: 33771451
Nature. 2021 Sep;597(7878):726-731
pubmed: 34526716
Cell. 2020 May 28;181(5):1062-1079.e30
pubmed: 32386547
Cell. 2020 Oct 1;183(1):28-45
pubmed: 32976797
Trends Cell Biol. 2018 Jun;28(6):420-435
pubmed: 29602697
Elife. 2017 Nov 01;6:
pubmed: 29091028
Cell Commun Signal. 2016 Jan 05;14:1
pubmed: 26727894
Nat Cell Biol. 2019 Dec;21(12):1578-1589
pubmed: 31792379
Nat Rev Mol Cell Biol. 2021 Mar;22(3):196-213
pubmed: 33510441
Science. 2018 Jan 5;359(6371):
pubmed: 29301985
Nat Cell Biol. 2020 Aug;22(8):960-972
pubmed: 32719551
Adv Colloid Interface Sci. 2017 Jan;239:97-114
pubmed: 27291647
Cell. 2016 May 19;165(5):1067-1079
pubmed: 27203111
J Biol Chem. 2021 Jan-Jun;296:100659
pubmed: 33857479
Nat Rev Mol Cell Biol. 2021 Mar;22(3):215-235
pubmed: 33169001
Biophys J. 2020 Feb 4;118(3):753-764
pubmed: 31952807
Cell. 2021 Jan 7;184(1):207-225.e24
pubmed: 33333019
Nat Cell Biol. 2020 Oct;22(10):1187-1196
pubmed: 32929202
Mol Cell. 2019 Nov 7;76(3):395-411.e13
pubmed: 31522987
Nat Cell Biol. 2020 Apr;22(4):453-464
pubmed: 32203417
Nat Chem Biol. 2020 Mar;16(3):257-266
pubmed: 31792445
Genes Dev. 2019 Jul 1;33(13-14):799-813
pubmed: 31171700
Emerg Top Life Sci. 2020 Dec 11;4(3):307-329
pubmed: 33078839
Biochem Biophys Rep. 2015 Mar 24;1:33-51
pubmed: 29124132
Nature. 2020 Jan;577(7788):121-126
pubmed: 31853060
Annu Rev Cell Biol. 1993;9:265-315
pubmed: 8280462
J Mol Biol. 2018 Nov 2;430(23):4666-4684
pubmed: 30099028
Nature. 2021 Jul;595(7868):591-595
pubmed: 34163069
Science. 2020 Dec 11;370(6522):1317-1323
pubmed: 33303613
EMBO J. 2018 Mar 1;37(5):
pubmed: 29438978
Trends Cell Biol. 2019 Apr;29(4):308-322
pubmed: 30660504
Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11964-11969
pubmed: 30301810
Mol Cell. 2019 Nov 21;76(4):646-659.e6
pubmed: 31543422
Nature. 2018 Jun;558(7709):318-323
pubmed: 29849146
Nat Genet. 2020 Dec;52(12):1397-1411
pubmed: 33169020
Cell. 2016 Jun 16;165(7):1686-1697
pubmed: 27212236
Cell. 2017 Mar 23;169(1):13-23
pubmed: 28340338
Nat Struct Mol Biol. 2020 Apr;27(4):363-372
pubmed: 32231288
Nat Struct Mol Biol. 2018 Apr;25(4):341-346
pubmed: 29610493
Annu Rev Biophys. 2020 May 6;49:107-133
pubmed: 32004090
Nat Struct Mol Biol. 2018 Sep;25(9):833-840
pubmed: 30127355
J Cell Sci. 1995 Sep;108 ( Pt 9):3003-11
pubmed: 8537440
Annu Rev Genet. 2019 Dec 3;53:171-194
pubmed: 31430179

Auteurs

Wei Li (W)

Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.

Hao Jiang (H)

Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA. Electronic address: hj8d@virginia.edu.

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Classifications MeSH