Can We Estimate Functionality of Soil Microbial Communities from Structure-Derived Predictions? A Reality Test in Agricultural Soils.
GCEF
PanFP
Tax4Fun
agriculture
bacterial communities
barley
climate change
enzymes
wheat
Journal
Microbiology spectrum
ISSN: 2165-0497
Titre abrégé: Microbiol Spectr
Pays: United States
ID NLM: 101634614
Informations de publication
Date de publication:
03 09 2021
03 09 2021
Historique:
pubmed:
5
8
2021
medline:
11
1
2022
entrez:
4
8
2021
Statut:
ppublish
Résumé
Computational approaches that link bacterial 16S rRNA gene amplicon data to functional genes based on prokaryotic reference genomes have emerged. This study aims to validate or refute the applicability of the functional gene prediction tools for assessment and comparison of community functionality among experimental treatments, inducing either fast or slow responses in rhizosphere microbial community composition and function. Rhizosphere samples of wheat and barley were collected in two consecutive years at active and mature growth phases from organic and conventional farming plots with ambient or future-climate treatments of the Global Change Experimental Facility. Bacterial community composition was determined by 16S rRNA gene amplicon sequencing, and the activities of five extracellular enzymes involved in carbon (β-glucosidases, cellobiohydrolase, and xylosidase), nitrogen (
Identifiants
pubmed: 34346741
doi: 10.1128/Spectrum.00278-21
pmc: PMC8552701
doi:
Substances chimiques
DNA, Bacterial
0
RNA, Ribosomal, 16S
0
Soil
0
Carbon
7440-44-0
Nitrogen
N762921K75
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0027821Références
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