PIGG defines the Emm blood group system.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
17 09 2021
Historique:
received: 18 12 2020
accepted: 31 08 2021
entrez: 18 9 2021
pubmed: 19 9 2021
medline: 16 11 2021
Statut: epublish

Résumé

Emm is a high incidence red cell antigen with eight previously reported Emm- probands. Anti-Emm appears to be naturally occurring yet responsible for a clinically significant acute hemolytic transfusion reaction. Previous work suggests that Emm is located on a GPI-anchored protein, but the antigenic epitope and genetic basis have been elusive. We investigated samples from a South Asian Indian family with two Emm- brothers by whole genome sequencing (WGS). Additionally, samples from four unrelated Emm- individuals were investigated for variants in the candidate gene. Filtering for homozygous variants found in the Emm- brothers and by gnomAD frequency of < 0.001 resulted in 1818 variants with one of high impact; a 2-bp deletion causing a frameshift and premature stop codon in PIGG [NM_001127178.3:c.2624_2625delTA, p.(Leu875*), rs771819481]. PIGG encodes for a transferase, GPI-ethanolaminephosphate transferase II, which adds ethanolamine phosphate (EtNP) to the second mannose in a GPI-anchor. The four additional unrelated Emm- individuals had various PIGG mutations; deletion of Exons 2-3, deletion of Exons 7-9, insertion/deletion (indel) in Exon 3, and new stop codon in Exon 5. The Emm- phenotype is associated with a rare deficiency of PIGG, potentially defining a new Emm blood group system composed of EtNP bound to mannose, part of the GPI-anchor. The results are consistent with the known PI-linked association of the Emm antigen, and may explain the production of the antibody in the absence of RBC transfusion. Any association with neurologic phenotypes requires further research.

Identifiants

pubmed: 34535746
doi: 10.1038/s41598-021-98090-w
pii: 10.1038/s41598-021-98090-w
pmc: PMC8448728
doi:

Substances chimiques

Blood Group Antigens 0
PIGG protein, human EC 2.7.1.-
Phosphotransferases (Alcohol Group Acceptor) EC 2.7.1.-

Types de publication

Case Reports Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

18545

Informations de copyright

© 2021. The Author(s).

Références

Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Genome Biol. 2016 Jun 06;17(1):122
pubmed: 27268795
Nature. 2020 May;581(7809):434-443
pubmed: 32461654
Hum Mutat. 2017 Oct;38(10):1394-1401
pubmed: 28581210
Bioinformatics. 2014 Sep 1;30(17):2503-5
pubmed: 24812344
Am J Hum Genet. 2016 Apr 7;98(4):615-26
pubmed: 26996948
Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33
pubmed: 25431634
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Cell. 2009 Oct 16;139(2):352-65
pubmed: 19837036
BMC Genomics. 2016 Oct 21;17(1):817
pubmed: 27769165
Blood. 1990 Apr 1;75(7):1404-7
pubmed: 2317557
J Biol Chem. 2005 Mar 11;280(10):9728-34
pubmed: 15632136
Immunohematology. 2018 Jun;34(2):39-45
pubmed: 29989417
Vox Sang. 2014 May;106(4):385-6
pubmed: 24164348
Transfusion. 1987 Jul-Aug;27(4):319-21
pubmed: 3603660
Open Biol. 2020 Mar;10(3):190290
pubmed: 32156170
Genome Res. 2011 May;21(5):734-40
pubmed: 21245279
Brief Bioinform. 2013 Mar;14(2):178-92
pubmed: 22517427
Genome Biol. 2016 Jun 01;17(1):118
pubmed: 27250555

Auteurs

William J Lane (WJ)

Department of Pathology, Hale Building for Transformative Medicine, Brigham and Women's Hospital, Rm 8002L, 60 Fenwood Rd, Boston, MA, 02115, USA. wlane@bwh.harvard.edu.
Harvard Medical School, Boston, MA, USA. wlane@bwh.harvard.edu.

Judith Aeschlimann (J)

Immunohematology and Genomics Laboratory, New York Blood Center, New York, NY, USA.

Sunitha Vege (S)

Immunohematology and Genomics Laboratory, New York Blood Center, New York, NY, USA.

Christine Lomas-Francis (C)

Immunohematology and Genomics Laboratory, New York Blood Center, New York, NY, USA.

Anna Burgos (A)

Immunohematology and Genomics Laboratory, New York Blood Center, New York, NY, USA.

Helen H Mah (HH)

Department of Pathology, Hale Building for Transformative Medicine, Brigham and Women's Hospital, Rm 8002L, 60 Fenwood Rd, Boston, MA, 02115, USA.

Justin B L Halls (JBL)

Department of Pathology, Hale Building for Transformative Medicine, Brigham and Women's Hospital, Rm 8002L, 60 Fenwood Rd, Boston, MA, 02115, USA.
Harvard Medical School, Boston, MA, USA.

Peter Baeck (P)

Childrens Clinic, County Hospital, Kalmar, Sweden.

Peter C Ligthart (PC)

Department of Immunohematology Diagnostic Services, Sanquin, Amsterdam, The Netherlands.

Barbera Veldhuisen (B)

Department of Immunohematology Diagnostic Services, Sanquin, Amsterdam, The Netherlands.

Ripal J Shah (RJ)

Prathama Blood Center, Ahmedabad, India.

Sanmukh R Joshi (SR)

Department of Research, Lok Samarpan Raktdan Kendra, Surat, Gujarat, India.

Connie M Westhoff (CM)

Immunohematology and Genomics Laboratory, New York Blood Center, New York, NY, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH