Target highlights in CASP14: Analysis of models by structure providers.


Journal

Proteins
ISSN: 1097-0134
Titre abrégé: Proteins
Pays: United States
ID NLM: 8700181

Informations de publication

Date de publication:
12 2021
Historique:
revised: 13 09 2021
received: 08 05 2021
accepted: 16 09 2021
pubmed: 26 9 2021
medline: 26 2 2022
entrez: 25 9 2021
Statut: ppublish

Résumé

The biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. The authors highlight the most relevant features of the target proteins and discuss how well these features were reproduced in the respective submitted predictions. The overall ability to predict three-dimensional structures of proteins has improved remarkably in CASP14, and many difficult targets were modeled with impressive accuracy. For the first time in the history of CASP, the experimentalists not only highlighted that computational models can accurately reproduce the most critical structural features observed in their targets, but also envisaged that models could serve as a guidance for further studies of biologically-relevant properties of proteins.

Identifiants

pubmed: 34561912
doi: 10.1002/prot.26247
pmc: PMC8616854
mid: NIHMS1743318
doi:

Substances chimiques

Proteins 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

1647-1672

Subventions

Organisme : NIGMS NIH HHS
ID : P41 GM103311
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI020459
Pays : United States
Organisme : NIH HHS
ID : S10 OD021600
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM100482
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI102546
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM117373
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM117930
Pays : United States
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NIAID NIH HHS
ID : HHSN272201700060C
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM137021
Pays : United States
Organisme : NCI NIH HHS
ID : R35 CA220430
Pays : United States
Organisme : NIGMS NIH HHS
ID : P41 GM103832
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM079429
Pays : United States
Organisme : NCI NIH HHS
ID : P01 CA092584
Pays : United States
Organisme : NIAID NIH HHS
ID : R37 AI020459
Pays : United States

Informations de copyright

© 2021 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals LLC.

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Auteurs

Leila T Alexander (LT)

Biozentrum, University of Basel, Basel, Switzerland.
Computational Structural Biology, SIB Swiss Institute of Bioinformatics, Basel, Switzerland.

Rosalba Lepore (R)

Barcelona Supercomputing Center (BSC), Barcelona, Spain.

Andriy Kryshtafovych (A)

Genome Center, University of California, Davis, Davis, California, USA.

Athanassios Adamopoulos (A)

Oncode Institute and Division of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands.

Markus Alahuhta (M)

Bioscience Center, National Renewable Energy Laboratory, Golden, Colorado, USA.

Ann M Arvin (AM)

Department of Pediatrics, Stanford University School of Medicine, Stanford, California, USA.
Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.

Yannick J Bomble (YJ)

Bioscience Center, National Renewable Energy Laboratory, Golden, Colorado, USA.

Bettina Böttcher (B)

Biocenter and Rudolf Virchow Center, Julius-Maximilians Universität Würzburg, Würzburg, Germany.

Cécile Breyton (C)

Univ. Grenoble Alpes, CNRS, CEA, Institute for Structural Biology, Grenoble, France.

Valerio Chiarini (V)

Program in Structural Biology and Biophysics, Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

Naga Babu Chinnam (NB)

Department of Molecular and Cellular Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

Wah Chiu (W)

Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.
Bioengineering, Stanford University School of Medicine, Stanford, California, USA.
Division of Cryo-EM and Bioimaging SSRL, SLAC National Accelerator Laboratory, Menlo Park, California, USA.

Krzysztof Fidelis (K)

Genome Center, University of California, Davis, Davis, California, USA.

Rhys Grinter (R)

Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, Australia.

Gagan D Gupta (GD)

Radiation Biology & Health Sciences Division, Bhabha Atomic Research Centre, Mumbai, India.

Marcus D Hartmann (MD)

Department of Protein Evolution, Max Planck Institute for Developmental Biology, Tübingen, Germany.

Christopher S Hayes (CS)

Department of Molecular, Cellular and Developmental Biology, University of California, Santa Barbara, Santa Barbara, California, USA.
Biomolecular Science and Engineering Program, University of California, Santa Barbara, Santa Barbara, California, USA.

Tatjana Heidebrecht (T)

Oncode Institute and Division of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands.

Andrea Ilari (A)

Institute of Molecular Biology and Pathology of the National Research Council of Italy (CNR), Rome, Italy.

Andrzej Joachimiak (A)

Center for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
X-ray Science Division, Argonne National Laboratory, Structural Biology Center, Argonne, Illinois, USA.
Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois, USA.

Youngchang Kim (Y)

Center for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
X-ray Science Division, Argonne National Laboratory, Structural Biology Center, Argonne, Illinois, USA.

Romain Linares (R)

Univ. Grenoble Alpes, CNRS, CEA, Institute for Structural Biology, Grenoble, France.

Andrew L Lovering (AL)

School of Biosciences, University of Birmingham, Birmingham, UK.

Vladimir V Lunin (VV)

Bioscience Center, National Renewable Energy Laboratory, Golden, Colorado, USA.

Andrei N Lupas (AN)

Department of Protein Evolution, Max Planck Institute for Developmental Biology, Tübingen, Germany.

Cihan Makbul (C)

Biocenter and Rudolf Virchow Center, Julius-Maximilians Universität Würzburg, Würzburg, Germany.

Karolina Michalska (K)

Center for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
X-ray Science Division, Argonne National Laboratory, Structural Biology Center, Argonne, Illinois, USA.

John Moult (J)

Department of Cell Biology and Molecular Genetics, Institute for Bioscience and Biotechnology Research, University of Maryland, Rockville, Maryland, USA.

Prasun K Mukherjee (PK)

Nuclear Agriculture & Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India.

William Sam Nutt (WS)

Center for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
X-ray Science Division, Argonne National Laboratory, Structural Biology Center, Argonne, Illinois, USA.

Stefan L Oliver (SL)

Department of Pediatrics, Stanford University School of Medicine, Stanford, California, USA.

Anastassis Perrakis (A)

Oncode Institute and Division of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands.

Lucy Stols (L)

Center for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
X-ray Science Division, Argonne National Laboratory, Structural Biology Center, Argonne, Illinois, USA.

John A Tainer (JA)

Department of Molecular and Cellular Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.
Department of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Maya Topf (M)

Institute of Structural and Molecular Biology, Birkbeck, University College London, London, UK.
Centre for Structural Systems Biology, Leibniz-Institut für Experimentelle Virologie, Hamburg, Germany.

Susan E Tsutakawa (SE)

Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

Mauricio Valdivia-Delgado (M)

School of Biosciences, University of Birmingham, Birmingham, UK.

Torsten Schwede (T)

Biozentrum, University of Basel, Basel, Switzerland.
Computational Structural Biology, SIB Swiss Institute of Bioinformatics, Basel, Switzerland.

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