Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure.
artificial intelligence
genetic factors
heart failure
single nucleotide polymorphism
Journal
Cells
ISSN: 2073-4409
Titre abrégé: Cells
Pays: Switzerland
ID NLM: 101600052
Informations de publication
Date de publication:
15 09 2021
15 09 2021
Historique:
received:
31
07
2021
revised:
07
09
2021
accepted:
13
09
2021
entrez:
28
9
2021
pubmed:
29
9
2021
medline:
17
11
2021
Statut:
epublish
Résumé
Heart failure (HF) is a global pandemic public health burden affecting one in five of the general population in their lifetime. For high-risk individuals, early detection and prediction of HF progression reduces hospitalizations, reduces mortality, improves the individual's quality of life, and reduces associated medical costs. In using an artificial intelligence (AI)-assisted genome-wide association study of a single nucleotide polymorphism (SNP) database from 117 asymptomatic high-risk individuals, we identified a SNP signature composed of 13 SNPs. These were annotated and mapped into six protein-coding genes (GAD2, APP, RASGEF1C, MACROD2, DMD, and DOCK1), a pseudogene (PGAM1P5), and various non-coding RNA genes (LINC01968, LINC00687, LOC105372209, LOC101928047, LOC105372208, and LOC105371356). The SNP signature was found to have a good performance when predicting HF progression, namely with an accuracy rate of 0.857 and an area under the curve of 0.912. Intriguingly, analysis of the protein connectivity map revealed that DMD, RASGEF1C, MACROD2, DOCK1, and PGAM1P5 appear to form a protein interaction network in the heart. This suggests that, together, they may contribute to the pathogenesis of HF. Our findings demonstrate that a combination of AI-assisted identifications of SNP signatures and clinical parameters are able to effectively identify asymptomatic high-risk subjects that are predisposed to HF.
Identifiants
pubmed: 34572079
pii: cells10092430
doi: 10.3390/cells10092430
pmc: PMC8470162
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Ministry of Science and Technology, Taiwan
ID : MOST110-2314-B-182A-113-MY3
Organisme : Ministry of Science and Technology, Taiwan
ID : MOST109-2320-B-182A-020
Organisme : Ministry of Science and Technology, Taiwan
ID : MOST 109-2320-B-010-043
Organisme : Ministry of Science and Technology, Taiwan
ID : MOST 109-2634-F-010-003
Organisme : Chang Gung Memorial Hospital
ID : CRRPG2H0181-183
Organisme : Chang Gung Memorial Hospital
ID : CORPG2H0041-0043
Organisme : Chang Gung Memorial Hospital
ID : CMRPG2H000091-0093
Organisme : Chang Gung Memorial Hospital
ID : CMRPG2K0141-142
Organisme : Chang Gung Memorial Hospital
ID : CLRPG2L0051
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