CDKL5 kinase controls transcription-coupled responses to DNA damage.


Journal

The EMBO journal
ISSN: 1460-2075
Titre abrégé: EMBO J
Pays: England
ID NLM: 8208664

Informations de publication

Date de publication:
01 12 2021
Historique:
revised: 08 09 2021
received: 16 03 2021
accepted: 09 09 2021
pubmed: 5 10 2021
medline: 22 12 2021
entrez: 4 10 2021
Statut: ppublish

Résumé

Mutations in the gene encoding the CDKL5 kinase are among the most common genetic causes of childhood epilepsy and can also give rise to the severe neurodevelopmental condition CDD (CDKL5 deficiency disorder). Despite its importance for human health, the phosphorylation targets and cellular roles of CDKL5 are poorly understood, especially in the cell nucleus. Here, we report that CDKL5 is recruited to sites of DNA damage in actively transcribed regions of the nucleus. A quantitative phosphoproteomic screen for nuclear CDKL5 substrates reveals a network of transcriptional regulators including Elongin A (ELOA), phosphorylated on a specific CDKL5 consensus motif. Recruitment of CDKL5 and ELOA to damaged DNA, and subsequent phosphorylation of ELOA, requires both active transcription and the synthesis of poly(ADP-ribose) (PAR), to which CDKL5 can bind. Critically, CDKL5 kinase activity is essential for the transcriptional silencing of genes induced by DNA double-strand breaks. Thus, CDKL5 is a DNA damage-sensing, PAR-controlled transcriptional modulator, a finding with implications for understanding the molecular basis of CDKL5-related diseases.

Identifiants

pubmed: 34605059
doi: 10.15252/embj.2021108271
pmc: PMC8634139
doi:

Substances chimiques

ELOA protein, human 0
Elongin 0
Phosphoproteins 0
Poly Adenosine Diphosphate Ribose 26656-46-2
Protein Serine-Threonine Kinases EC 2.7.11.1
CDKL5 protein, human EC 2.7.11.22

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e108271

Subventions

Organisme : Medical Research Council
ID : MC_UU_00018/5
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12016/1
Pays : United Kingdom

Informations de copyright

© 2021 The Authors. Published under the terms of the CC BY 4.0 license.

Références

Cell Rep. 2019 Jan 15;26(3):573-581.e5
pubmed: 30650352
Mol Cell Proteomics. 2019 Aug;18(8):1700-1702
pubmed: 31097673
Ann Appl Stat. 2016 Jun;10(2):946-963
pubmed: 28367255
Nat Rev Mol Cell Biol. 2013 Apr;14(4):197-210
pubmed: 23486281
J Biol Chem. 2015 Jun 12;290(24):15030-41
pubmed: 25878247
J Invest Dermatol. 2015 Mar;135(3):734-741
pubmed: 25290684
Nat Methods. 2012 Feb 28;9(3):245-53
pubmed: 22373911
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
pubmed: 30395289
EMBO J. 2018 Dec 14;37(24):
pubmed: 30377159
Cold Spring Harb Perspect Biol. 2013 Sep 01;5(9):
pubmed: 24003211
EMBO J. 2018 Dec 14;37(24):
pubmed: 30266825
Expert Rev Mol Med. 2020 Jun 08;22:e2
pubmed: 32508294
Science. 2002 Dec 6;298(5600):1912-34
pubmed: 12471243
Stat Appl Genet Mol Biol. 2003;2:Article3
pubmed: 16646781
J Proteome Res. 2017 Sep 1;16(9):3448-3459
pubmed: 28741359
Nat Struct Mol Biol. 2012 Feb 12;19(3):276-82
pubmed: 22343725
Hum Mutat. 2017 Aug;38(8):922-931
pubmed: 28544139
J Mol Biol. 2017 May 5;429(9):1277-1288
pubmed: 28363678
Nat Struct Mol Biol. 2013 Mar;20(3):317-25
pubmed: 23377543
Cell. 2010 Jun 11;141(6):970-81
pubmed: 20550933
EMBO J. 2018 Dec 14;37(24):
pubmed: 30266824
Genes Dev. 2015 Jan 15;29(2):197-211
pubmed: 25593309
Nat Commun. 2015 Aug 19;6:8088
pubmed: 26286827
Mol Cell. 2017 Jun 15;66(6):801-817
pubmed: 28622525
Cell. 2015 Jun 18;161(7):1592-605
pubmed: 26052046
Am J Hum Genet. 2005 Mar;76(3):510-6
pubmed: 15645389
Nat Rev Neurosci. 2016 Nov;17(11):673-679
pubmed: 27630045
Cell. 2020 Mar 19;180(6):1245-1261.e21
pubmed: 32142654
Bioinformatics. 2002;18 Suppl 1:S96-104
pubmed: 12169536
Prog Biophys Mol Biol. 2015 Mar;117(2-3):194-205
pubmed: 25550082
Am J Hum Genet. 2003 Jun;72(6):1401-11
pubmed: 12736870
Mol Cell. 2018 Mar 15;69(6):1046-1061.e5
pubmed: 29547717
Genes Dev. 2019 Jun 1;33(11-12):684-704
pubmed: 31048545
Science. 2009 Sep 4;325(5945):1240-3
pubmed: 19661379
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Nucleic Acids Res. 2021 Jan 8;49(D1):D529-D535
pubmed: 33079988
Mol Cell. 2016 Jan 7;61(1):27-38
pubmed: 26669263
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515
pubmed: 30395287
Nat Struct Mol Biol. 2019 Sep;26(9):771-776
pubmed: 31439940
EMBO J. 2021 Dec 1;40(23):e108271
pubmed: 34605059
Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613
pubmed: 30476243
Nat Protoc. 2016 Dec;11(12):2301-2319
pubmed: 27809316
Bioinformatics. 2005 Aug 15;21(16):3435-8
pubmed: 15955783
Nat Commun. 2020 Apr 21;11(1):1924
pubmed: 32317630
J Proteome Res. 2014 Dec 5;13(12):5293-309
pubmed: 25337643
Nature. 2008 Jan 3;451(7174):81-5
pubmed: 18172500
Science. 2016 Jul 1;353(6294):45-50
pubmed: 27256882
Science. 2006 Jun 23;312(5781):1798-802
pubmed: 16794079
Am J Med Genet A. 2020 May;182(5):1217-1222
pubmed: 32034940
Nucleic Acids Res. 2016 Feb 18;44(3):993-1006
pubmed: 26673700
Eur J Hum Genet. 2013 Mar;21(3):266-73
pubmed: 22872100
ACS Chem Biol. 2016 Nov 18;11(11):3179-3190
pubmed: 27689388
Sci Rep. 2016 Jan 18;6:19567
pubmed: 26777522
Int J Mol Sci. 2019 Oct 15;20(20):
pubmed: 31618813
Nature. 2013 Sep 5;501(7465):58-62
pubmed: 23995680

Auteurs

Taran Khanam (T)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Ivan Muñoz (I)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Florian Weiland (F)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Thomas Carroll (T)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Michael Morgan (M)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Barbara N Borsos (BN)

Albert Szent-Györgyi Medical School, Institute of Pathology, University of Szeged, Szeged, Hungary.

Vasiliki Pantazi (V)

Albert Szent-Györgyi Medical School, Institute of Pathology, University of Szeged, Szeged, Hungary.

Meghan Slean (M)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Miroslav Novak (M)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Rachel Toth (R)

MRC Reagents and Services, School of Life Sciences, University of Dundee, Dundee, UK.

Paul Appleton (P)

Dundee Imaging Facility, School of Life Sciences, University of Dundee, Dundee, UK.

Tibor Pankotai (T)

Albert Szent-Györgyi Medical School, Institute of Pathology, University of Szeged, Szeged, Hungary.

Houjiang Zhou (H)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

John Rouse (J)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH