Detection of whole genome selection signatures of Pakistani Teddy goat.
FST
Hp statistics
Pooled-seq
Selection signatures
TD
Teddy goat
Journal
Molecular biology reports
ISSN: 1573-4978
Titre abrégé: Mol Biol Rep
Pays: Netherlands
ID NLM: 0403234
Informations de publication
Date de publication:
Nov 2021
Nov 2021
Historique:
received:
26
06
2021
accepted:
27
09
2021
pubmed:
6
10
2021
medline:
15
1
2022
entrez:
5
10
2021
Statut:
ppublish
Résumé
Natural and artificial selection tend to cause variability that contributes to shape the genome of livestock in a way that differentiates them among the animal kingdom. The particular aim here is to identify positive selection signatures with whole genome pooled-sequence data of Pakistani Teddy goat. Paired-end alignment of 635,357,043 reads of Teddy goat with (ARS1) reference genome assembly was carried out. Pooled-Heterozygosity (Hp) and Tajima's D (TD) are applied for validation and getting better hits of selection signals, while pairwise F In brief, this study identified the genes under selection in Pakistani Teddy goat that will be helpful to refining the marker-assisted breeding policies and converging required production traits within and across other goat breeds and to explore full genetic potential of this valued species of livestock.
Sections du résumé
BACKGROUND
BACKGROUND
Natural and artificial selection tend to cause variability that contributes to shape the genome of livestock in a way that differentiates them among the animal kingdom. The particular aim here is to identify positive selection signatures with whole genome pooled-sequence data of Pakistani Teddy goat.
METHODS AND RESULTS
RESULTS
Paired-end alignment of 635,357,043 reads of Teddy goat with (ARS1) reference genome assembly was carried out. Pooled-Heterozygosity (Hp) and Tajima's D (TD) are applied for validation and getting better hits of selection signals, while pairwise F
CONCLUSIONS
CONCLUSIONS
In brief, this study identified the genes under selection in Pakistani Teddy goat that will be helpful to refining the marker-assisted breeding policies and converging required production traits within and across other goat breeds and to explore full genetic potential of this valued species of livestock.
Identifiants
pubmed: 34609690
doi: 10.1007/s11033-021-06726-x
pii: 10.1007/s11033-021-06726-x
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
7273-7280Informations de copyright
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.
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