Mutation resource of Samba Mahsuri revealed the presence of high extent of variations among key traits for rice improvement.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 08 06 2021
accepted: 05 10 2021
entrez: 20 10 2021
pubmed: 21 10 2021
medline: 26 11 2021
Statut: epublish

Résumé

To create novel variants for morphological, physiological, and biotic stress tolerance traits, induced mutations were created using Ethyl Methane Sulphonate (EMS) in the background of Samba Mahsuri (BPT 5204), a popular and mega rice variety of India. A population derived from 10, 500 M1 plants and their descendants were phenotyped for a wide range of traits leading to the identification of 124 mutants having variations in key agro-morphological traits, and 106 mutants exhibiting variation for physiological traits. Higher yield is the ultimate goal of crop improvement and we identified 574 mutants having higher yield compared to wild type by having better yield attributing traits. Further, a total of 50 mutants showed better panicle exertion phenotypes as compared to Samba Mahsuri leading to enhancement of yield. Upon rigorous screening for three major biotic stresses, 8 mutants showed enhanced tolerance for yellow stem borer (YSB), and 13 different mutants each showed enhanced tolerance for sheath blight (ShB) and bacterial leaf blight (BLB), respectively. In addition, screening at multiple locations that have diverse field isolates identified 3, 3, and 5 lines for tolerance to ShB, YSB and BLB, respectively. On the whole, 1231 desired mutant lines identified at M2 were forwarded to an advanced generation (M5). PCR based allele mining indicated that the BLB tolerant mutants have a different allele than the reported alleles for well-known genes affecting bacterial blight resistance. Whole genome re-sequencing revealed substantial variation in comparison to Samba Mahsuri. The lines showing enhanced tolerance to important biotic stresses (YSB, ShB and BLB) as well as several economically important traits are unique genetic resources which can be utilized for the identification of novel genes/alleles for different traits. The lines which have better agronomic features can be used as pre-breeding lines. The entire mutant population is maintained as a national resource for genetic improvement of the rice crop.

Identifiants

pubmed: 34669755
doi: 10.1371/journal.pone.0258816
pii: PONE-D-21-18858
pmc: PMC8528289
doi:

Substances chimiques

Ethyl Methanesulfonate 9H154DI0UP

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0258816

Déclaration de conflit d'intérêts

NO authors have competing interests.

Références

Rice (N Y). 2018 Jan 22;11(1):8
pubmed: 29356995
Nat Biotechnol. 2012 May 07;30(5):390-2
pubmed: 22565958
Proc Natl Acad Sci U S A. 1984 Dec;81(24):8014-8
pubmed: 6096873
Front Plant Sci. 2018 Sep 04;9:1179
pubmed: 30233603
Genes Genet Syst. 2009 Oct;84(5):361-70
pubmed: 20154423
Front Plant Sci. 2017 Aug 21;8:1431
pubmed: 28871266
Plant Biotechnol J. 2017 Jun;15(6):713-717
pubmed: 27875019
Sci Rep. 2016 Jul 28;6:30572
pubmed: 27465821
Plant Cell Rep. 2003 Oct;22(3):218-23
pubmed: 12845474
Fly (Austin). 2012 Apr-Jun;6(2):80-92
pubmed: 22728672
Genetics. 2015 Oct;201(2):795-808
pubmed: 26275424
Front Plant Sci. 2019 Nov 08;10:1326
pubmed: 31781133
BMC Genet. 2016 Sep 05;17(1):127
pubmed: 27597653
Nat Biotechnol. 2012 Jan 22;30(2):174-8
pubmed: 22267009
Plants (Basel). 2019 Sep 26;8(10):
pubmed: 31561513
PLoS One. 2018 May 29;13(5):e0198260
pubmed: 29813124
Plant J. 2011 Aug;67(4):715-25
pubmed: 21518053
Bioinformatics. 2007 Oct 1;23(19):2633-5
pubmed: 17586829
Nat Commun. 2010 Nov 30;1:132
pubmed: 21119645
Nat Commun. 2017 May 04;8:15324
pubmed: 28469237
Plant Physiol. 2001 Mar;125(3):1175-7
pubmed: 11244097
Plant Physiol. 2009 Jan;149(1):165-70
pubmed: 19126710
Sci Rep. 2013;3:2149
pubmed: 23985993
Plants (Basel). 2019 Aug 29;8(9):
pubmed: 31470516
BMC Plant Biol. 2007 Apr 11;7:19
pubmed: 17428339
Mol Genet Genomics. 2008 Mar;279(3):213-23
pubmed: 17952471
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Curr Protoc Plant Biol. 2016 Sep;1(3):466-487
pubmed: 31725960
Plant Physiol. 2000 Jun;123(2):439-42
pubmed: 10859174
Theor Appl Genet. 2015 Nov;128(11):2131-42
pubmed: 26246331
Plant Cell. 2017 Jun;29(6):1218-1231
pubmed: 28576844
Nat Rev Genet. 2014 Oct;15(10):662-76
pubmed: 25139187
Mol Plant. 2013 May;6(3):596-604
pubmed: 23204502
Rice (N Y). 2017 Dec;10(1):10
pubmed: 28378144
Rice (N Y). 2019 Jul 18;12(1):52
pubmed: 31321562
Rice (N Y). 2015 Dec;8(1):36
pubmed: 26054239
Plant Mol Biol. 2005 Sep;59(1):85-97
pubmed: 16217604
Mol Genet Genomics. 2004 Sep;272(2):149-55
pubmed: 15338279
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3570-5
pubmed: 25733849

Auteurs

Gopi Potupureddi (G)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Vishalakshi Balija (V)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Suneel Ballichatla (S)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Gokulan C G (G)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Komal Awalellu (K)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Swathi Lekkala (S)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Karteek Jallipalli (K)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Gayathri M G (G)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Ershad Mohammad (E)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Milton M (M)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Srikanth Arutla (S)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Rajender Burka (R)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Laha Gouri Shankar (L)

Crop Protection, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Padmakumari Ayyangari Phani (P)

Crop Protection, ICAR- Indian Institute of Rice Research, Hyderabad, India.

SubbaRao Lella Venkata (S)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Sundaram Raman Meenakshi (S)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Viraktamath B C (V)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Ravindra Babu Vemuri (RB)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Kranthi Brahma (K)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Raju Madnala (R)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Hitendra Kumar Patel (HK)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Ramesh Venkata Sonti (RV)

CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.

Maganti Sheshu Madhav (MS)

Crop Improvement, ICAR- Indian Institute of Rice Research, Hyderabad, India.

Articles similaires

T-Lymphocytes, Regulatory Lung Neoplasms Proto-Oncogene Proteins p21(ras) Animals Humans

Pathogenic mitochondrial DNA mutations inhibit melanoma metastasis.

Spencer D Shelton, Sara House, Luiza Martins Nascentes Melo et al.
1.00
DNA, Mitochondrial Humans Melanoma Mutation Neoplasm Metastasis

Prevalence and implications of fragile X premutation screening in Thailand.

Areerat Hnoonual, Sunita Kaewfai, Chanin Limwongse et al.
1.00
Humans Fragile X Mental Retardation Protein Thailand Male Female
Drought Resistance Gene Expression Profiling Gene Expression Regulation, Plant Gossypium Multigene Family

Classifications MeSH