The impact of folding modes and deuteration on the atomic resolution structure of hen egg-white lysozyme.

X-ray crystallography deuteration enzymatic activity folding dynamics folding modes hen egg-white lysozyme in vitro refolding isotope effect thermal stability

Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Dec 2021
Historique:
received: 13 08 2021
accepted: 20 10 2021
entrez: 6 12 2021
pubmed: 7 12 2021
medline: 8 3 2022
Statut: ppublish

Résumé

The biological function of a protein is intimately related to its structure and dynamics, which in turn are determined by the way in which it has been folded. In vitro refolding is commonly used for the recovery of recombinant proteins that are expressed in the form of inclusion bodies and is of central interest in terms of the folding pathways that occur in vivo. Here, biophysical data are reported for in vitro-refolded hydrogenated hen egg-white lysozyme, in combination with atomic resolution X-ray diffraction analyses, which allowed detailed comparisons with native hydrogenated and refolded perdeuterated lysozyme. Distinct folding modes are observed for the hydrogenated and perdeuterated refolded variants, which are determined by conformational changes to the backbone structure of the Lys97-Gly104 flexible loop. Surprisingly, the structure of the refolded perdeuterated protein is closer to that of native lysozyme than that of the refolded hydrogenated protein. These structural differences suggest that the observed decreases in thermal stability and enzymatic activity in the refolded perdeuterated and hydrogenated proteins are consequences of the macromolecular deuteration effect and of distinct folding dynamics, respectively. These results are discussed in the context of both in vitro and in vivo folding, as well as of lysozyme amyloidogenesis.

Identifiants

pubmed: 34866613
pii: S2059798321010950
doi: 10.1107/S2059798321010950
pmc: PMC8647175
doi:

Substances chimiques

Deuterium AR09D82C7G
Muramidase EC 3.2.1.17

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1579-1590

Subventions

Organisme : Lundbeckfonden
ID : R155-2015-2666
Organisme : Engineering and Physical Sciences Research Council
ID : GR/R99393/01
Organisme : Engineering and Physical Sciences Research Council
ID : EP/C015452/1

Informations de copyright

open access.

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Auteurs

Joao Ramos (J)

Life Sciences Group, Institute Laue-Langevin, 71 Avenue des Martyrs, 38000 Grenoble, France.

Valerie Laux (V)

Life Sciences Group, Institute Laue-Langevin, 71 Avenue des Martyrs, 38000 Grenoble, France.

Michael Haertlein (M)

Life Sciences Group, Institute Laue-Langevin, 71 Avenue des Martyrs, 38000 Grenoble, France.

V Trevor Forsyth (VT)

Life Sciences Group, Institute Laue-Langevin, 71 Avenue des Martyrs, 38000 Grenoble, France.

Estelle Mossou (E)

Partnership for Structural Biology (PSB), 71 Avenue des Martyrs, 38000 Grenoble, France.

Sine Larsen (S)

Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark.

Annette E Langkilde (AE)

Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark.

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Classifications MeSH