Identifying the essential nutritional requirements of the probiotic bacteria Bifidobacterium animalis and Bifidobacterium longum through genome-scale modeling.


Journal

NPJ systems biology and applications
ISSN: 2056-7189
Titre abrégé: NPJ Syst Biol Appl
Pays: England
ID NLM: 101677786

Informations de publication

Date de publication:
09 12 2021
Historique:
received: 29 01 2021
accepted: 03 11 2021
entrez: 10 12 2021
pubmed: 11 12 2021
medline: 30 3 2022
Statut: epublish

Résumé

Although bifidobacteria are widely used as probiotics, their metabolism and physiology remain to be explored in depth. In this work, strain-specific genome-scale metabolic models were developed for two industrially and clinically relevant bifidobacteria, Bifidobacterium animalis subsp. lactis BB-12

Identifiants

pubmed: 34887435
doi: 10.1038/s41540-021-00207-4
pii: 10.1038/s41540-021-00207-4
pmc: PMC8660834
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

47

Informations de copyright

© 2021. The Author(s).

Références

Arch Microbiol. 1976 Nov 2;110(23):271-7
pubmed: 1015952
Mol Syst Biol. 2011 Oct 11;7:535
pubmed: 21988831
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14422-7
pubmed: 12381787
Microbiol Mol Biol Rev. 2010 Sep;74(3):378-416
pubmed: 20805404
Biosystems. 2011 Aug;105(2):154-61
pubmed: 21575673
Appl Environ Microbiol. 2005 Nov;71(11):6564-70
pubmed: 16269682
Appl Environ Microbiol. 2007 Jan;73(1):179-85
pubmed: 17071792
Sci Rep. 2019 Dec 3;9(1):18222
pubmed: 31796826
Nat Protoc. 2011 Aug 04;6(9):1290-307
pubmed: 21886097
Nat Protoc. 2010 Jan;5(1):93-121
pubmed: 20057383
Front Microbiol. 2016 Jun 28;7:979
pubmed: 27446020
Microorganisms. 2014 Mar 28;2(2):92-110
pubmed: 27682233
FEMS Microbiol Ecol. 2005 Apr 1;52(2):145-52
pubmed: 16329901
J Bacteriol. 1951 Dec;62(6):771-7
pubmed: 14907631
Bacteriol Rev. 1972 Dec;36(4):407-77
pubmed: 4568761
J Mol Microbiol Biotechnol. 2007;12(1-2):9-19
pubmed: 17183207
Appl Microbiol Biotechnol. 2013 Oct;97(19):8729-39
pubmed: 23974365
Proteomics. 2011 Jul;11(13):2628-38
pubmed: 21630463
Front Microbiol. 2015 Nov 24;6:1331
pubmed: 26635786
J Biol Chem. 2011 Oct 7;286(40):34583-92
pubmed: 21832085
Appl Environ Microbiol. 2007 Oct;73(20):6444-9
pubmed: 17720833
Curr Opin Microbiol. 2010 Jun;13(3):344-9
pubmed: 20430689
Mol Syst Biol. 2007;3:121
pubmed: 17593909
J Nutr. 1998 Jan;128(1):91-6
pubmed: 9430608
Nucleic Acids Res. 2007 Jan;35(Database issue):D274-9
pubmed: 17135193
PLoS Comput Biol. 2014 Apr 24;10(4):e1003575
pubmed: 24762737
Int J Mol Sci. 2018 May 09;19(5):
pubmed: 29747442
Appl Environ Microbiol. 2007 Jun;73(11):3637-44
pubmed: 17434997
Front Microbiol. 2019 Jun 12;10:1316
pubmed: 31275260
Appl Environ Microbiol. 2006 Aug;72(8):5204-10
pubmed: 16885266
Biochem Soc Trans. 2018 Apr 17;46(2):249-260
pubmed: 29588387
BMC Microbiol. 2005 Mar 07;5:8
pubmed: 15752426
Jpn J Microbiol. 1972 May;16(3):239-42
pubmed: 4538355
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595
pubmed: 28594827
J Appl Microbiol. 2012 May;112(5):975-84
pubmed: 22335359
Nucleic Acids Res. 2016 Jan 4;44(D1):D523-6
pubmed: 26527720
Mol Cell Proteomics. 2006 Jun;5(6):1105-18
pubmed: 16549425
J Appl Microbiol. 2001 Jun;90(6):859-65
pubmed: 11412315
Microb Cell Fact. 2013 Nov 25;12:118
pubmed: 24274140
Acta Pathol Microbiol Scand. 1958;44(3):287-92
pubmed: 13605787
BMC Bioinformatics. 2007 Jun 20;8:212
pubmed: 17584497
Biochim Biophys Acta. 1960 Jan 15;37:361-3
pubmed: 13828461
BMC Microbiol. 2005 Jun 27;5:39
pubmed: 15982422
Appl Environ Microbiol. 2009 Jun;75(11):3627-33
pubmed: 19346354
J Appl Microbiol. 2007 Nov;103(5):1969-74
pubmed: 17953607
J Bacteriol. 1979 Jul;139(1):93-7
pubmed: 457606
Curr Microbiol. 1997 Sep;35(3):175-9
pubmed: 9236301
Curr Issues Intest Microbiol. 2003 Sep;4(2):71-5
pubmed: 14503691
J Bacteriol. 2001 May;183(9):2929-36
pubmed: 11292814
BMC Genomics. 2008 Feb 08;9:75
pubmed: 18261238
Jpn J Microbiol. 1968 Dec;12(4):395-402
pubmed: 5304593
Arch Biochem Biophys. 1954 Jan;48(1):225-32
pubmed: 13125593
Adv Exp Med Biol. 2007;603:106-15
pubmed: 17966408
Appl Environ Microbiol. 2013 Oct;79(20):6280-92
pubmed: 23913435
Anaerobe. 2017 Apr;44:40-47
pubmed: 28108391
Nucleic Acids Res. 2016 Jan 4;44(D1):D515-22
pubmed: 26476456
Biosci Microbiota Food Health. 2013;32(2):59-68
pubmed: 24936363
J Biol Chem. 2006 Dec 29;281(52):40041-8
pubmed: 17062565
BMC Syst Biol. 2014 Apr 03;8:41
pubmed: 24708835
PLoS One. 2014 Feb 05;9(2):e88260
pubmed: 24505453
BMC Syst Biol. 2018 Jun 19;12(1):73
pubmed: 29914471
J Biol Chem. 2016 Sep 16;291(38):20220-31
pubmed: 27502277
Microbiol Rev. 1981 Jun;45(2):316-54
pubmed: 7022156
Nat Biotechnol. 2010 Sep;28(9):977-82
pubmed: 20802497
Sci Rep. 2017 Nov 16;7(1):15721
pubmed: 29147021
Curr Opin Biotechnol. 2013 Apr;24(2):160-8
pubmed: 22940212
Glycoconj J. 2014 Nov;31(8):555-61
pubmed: 25043203
PLoS One. 2013;8(2):e54859
pubmed: 23424620
Biophys J. 2002 Nov;83(5):2879-82
pubmed: 12425318
Nat Biotechnol. 2010 Mar;28(3):245-8
pubmed: 20212490
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Nat Biotechnol. 2020 Mar;38(3):272-276
pubmed: 32123384
Appl Environ Microbiol. 2007 Sep;73(17):5653-6
pubmed: 17601805
Brief Bioinform. 2019 Jul 19;20(4):1085-1093
pubmed: 29447345
BMC Syst Biol. 2007 Jun 08;1:26
pubmed: 17555602
Science. 2010 Nov 19;330(6007):1099-102
pubmed: 21097934
Biosci Microbiota Food Health. 2015;34(4):87-93
pubmed: 26594608
Microbiol Resour Announc. 2021 Jul 8;10(27):e0007821
pubmed: 34236222
Appl Environ Microbiol. 2013 Dec;79(24):7628-38
pubmed: 24077711
Genes Nutr. 2011 Aug;6(3):285-306
pubmed: 21484167
J Bacteriol. 1968 Aug;96(2):472-8
pubmed: 5674058
Chem Pharm Bull (Tokyo). 1971 Jul;19(7):1516-8
pubmed: 5567062
J Bacteriol. 1967 Feb;93(2):574-6
pubmed: 6020562
Biosci Biotechnol Biochem. 2018 Sep;82(9):1606-1614
pubmed: 29847302
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5
pubmed: 24270786
J Bacteriol. 1959 Feb;77(2):230-6
pubmed: 13630876

Auteurs

Marie Schöpping (M)

Systems Biology, Discovery, Chr. Hansen A/S, 2970, Hørsholm, Denmark.
Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden.

Paula Gaspar (P)

Systems Biology, Discovery, Chr. Hansen A/S, 2970, Hørsholm, Denmark.

Ana Rute Neves (AR)

Systems Biology, Discovery, Chr. Hansen A/S, 2970, Hørsholm, Denmark.
Arla Foods Ingredients Group P/S, 6920, Videbæk, Denmark.

Carl Johan Franzén (CJ)

Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, 41296, Gothenburg, Sweden.

Ahmad A Zeidan (AA)

Systems Biology, Discovery, Chr. Hansen A/S, 2970, Hørsholm, Denmark. dkahze@chr-hansen.com.

Articles similaires

Populus Soil Microbiology Soil Microbiota Fungi
Aerosols Humans Decontamination Air Microbiology Masks
Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Semiconductors Photosynthesis Polymers Carbon Dioxide Bacteria

Classifications MeSH