The emergence of valency in colloidal crystals through electron equivalents.
Journal
Nature materials
ISSN: 1476-4660
Titre abrégé: Nat Mater
Pays: England
ID NLM: 101155473
Informations de publication
Date de publication:
05 2022
05 2022
Historique:
received:
09
03
2021
accepted:
11
11
2021
pubmed:
15
1
2022
medline:
6
5
2022
entrez:
14
1
2022
Statut:
ppublish
Résumé
Colloidal crystal engineering of complex, low-symmetry architectures is challenging when isotropic building blocks are assembled. Here we describe an approach to generating such structures based upon programmable atom equivalents (nanoparticles functionalized with many DNA strands) and mobile electron equivalents (small particles functionalized with a low number of DNA strands complementary to the programmable atom equivalents). Under appropriate conditions, the spatial distribution of the electron equivalents breaks the symmetry of isotropic programmable atom equivalents, akin to the anisotropic distribution of valence electrons or coordination sites around a metal atom, leading to a set of well-defined coordination geometries and access to three new low-symmetry crystalline phases. All three phases represent the first examples of colloidal crystals, with two of them having elemental analogues (body-centred tetragonal and high-pressure gallium), while the third (triple double-gyroid structure) has no known natural equivalent. This approach enables the creation of complex, low-symmetry colloidal crystals that might find use in various technologies.
Identifiants
pubmed: 35027717
doi: 10.1038/s41563-021-01170-5
pii: 10.1038/s41563-021-01170-5
doi:
Substances chimiques
DNA
9007-49-2
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
580-587Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.
Références
Lewis, G. N. The atom and the molecule. J. Am. Chem. Soc. 38, 762–785 (1916).
doi: 10.1021/ja02261a002
Pauling, L. The Nature of the Chemical Bond, and the Structure of Molecules and Crystals: An Introduction to Modern Structural Chemistry 2nd edn (Cornell Univ. Press, 1940).
Kalsin, A. M. et al. Electrostatic self-assembly of binary nanoparticle crystals with a diamond-like lattice. Science 312, 420–424 (2006).
doi: 10.1126/science.1125124
Shevchenko, E. V., Talapin, D. V., Kotov, N. A., O’Brien, S. & Murray, C. B. Structural diversity in binary nanoparticle superlattices. Nature 439, 55–59 (2006).
doi: 10.1038/nature04414
Boles, M. A., Engel, M. & Talapin, D. V. Self-assembly of colloidal nanocrystals: from intricate structures to functional materials. Chem. Rev. 116, 11220–11289 (2016).
doi: 10.1021/acs.chemrev.6b00196
Glotzer, S. C. & Solomon, M. J. Anisotropy of building blocks and their assembly into complex structures. Nat. Mater. 6, 557–562 (2007).
doi: 10.1038/nmat1949
Damasceno, P. F., Engel, M. & Glotzer, S. C. Predictive self-assembly of polyhedra into complex structures. Science 337, 453–457 (2012).
doi: 10.1126/science.1220869
Wang, Y. F. et al. Colloids with valence and specific directional bonding. Nature 491, 51–55 (2012).
doi: 10.1038/nature11564
Huang, M. J. et al. Selective assemblies of giant tetrahedra via precisely controlled positional interactions. Science 348, 424–428 (2015).
doi: 10.1126/science.aaa2421
Liu, W. Y. et al. Diamond family of nanoparticle superlattices. Science 351, 582–586 (2016).
doi: 10.1126/science.aad2080
Lin, H. X. et al. Clathrate colloidal crystals. Science 355, 931–935 (2017).
doi: 10.1126/science.aal3919
Yi, C. et al. Self-limiting directional nanoparticle bonding governed by reaction stoichiometry. Science 369, 1369–1374 (2020).
doi: 10.1126/science.aba8653
He, M. X. et al. Colloidal diamond. Nature 585, 524–529 (2020).
doi: 10.1038/s41586-020-2718-6
Mirkin, C. A., Letsinger, R. L., Mucic, R. C. & Storhoff, J. J. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382, 607–609 (1996).
doi: 10.1038/382607a0
Park, S. J., Lazarides, A. A., Storhoff, J. J., Pesce, L. & Mirkin, C. A. The structural characterization of oligonucleotide-modified gold nanoparticle networks formed by DNA hybridization. J. Phys. Chem. B 108, 12375–12380 (2004).
doi: 10.1021/jp040242b
Park, S. Y. et al. DNA-programmable nanoparticle crystallization. Nature 451, 553–556 (2008).
doi: 10.1038/nature06508
Nykypanchuk, D., Maye, M. M., van der Lelie, D. & Gang, O. DNA-guided crystallization of colloidal nanoparticles. Nature 451, 549–552 (2008).
doi: 10.1038/nature06560
Jones, M. R., Seeman, N. C. & Mirkin, C. A. Programmable materials and the nature of the DNA bond. Science 347, 1260901 (2015).
doi: 10.1126/science.1260901
Macfarlane, R. J. et al. Nanoparticle superlattice engineering with DNA. Science 334, 204–208 (2011).
doi: 10.1126/science.1210493
Girard, M. et al. Particle analogs of electrons in colloidal crystals. Science 364, 1174–1178 (2019).
doi: 10.1126/science.aaw8237
Wang, S. Z. et al. Colloidal crystal "Alloys". J. Am. Chem. Soc. 141, 20443–20450 (2019).
doi: 10.1021/jacs.9b11109
Auyeung, E. et al. DNA-mediated nanoparticle crystallization into Wulff polyhedra. Nature 505, 73–77 (2014).
doi: 10.1038/nature12739
Auyeung, E., Macfarlane, R. J., Choi, C. H. J., Cutler, J. I. & Mirkin, C. A. Transitioning DNA-engineered nanoparticle superlattices from solution to the solid state. Adv. Mater. 24, 5181–5186 (2012).
doi: 10.1002/adma.201202069
Laramy, C. R., O’Brien, M. N. & Mirkin, C. A. Crystal engineering with DNA. Nat. Rev. Mater. 4, 201–224 (2019).
doi: 10.1038/s41578-019-0087-2
Anderson, J. A., Glaser, J. & Glotzer, S. C. HOOMD-blue: a Python package for high-performance molecular dynamics and hard particle Monte Carlo simulations. Comput. Mater. Sci. 173, 109363 (2020).
doi: 10.1016/j.commatsci.2019.109363
Akcora, P. et al. Anisotropic self-assembly of spherical polymer-grafted nanoparticles. Nat. Mater. 8, 354–359 (2009).
doi: 10.1038/nmat2404
Pólya, G., Mathematics and Plausible Reasoning (Oxford Univ. Press, 1954).
doi: 10.1515/9780691218304
Iacovella, C. R., Keys, A. S., Horsch, M. A. & Glotzer, S. C. Icosahedral packing of polymer-tethered nanospheres and stabilization of the gyroid phase. Phys. Rev. E 75, 040801 (2007).
doi: 10.1103/PhysRevE.75.040801
Hyde, S. T., O’Keeffe, M. & Proserpio, D. M. A short history of an elusive yet ubiquitous structure in chemistry, materials, and mathematics. Angew. Chem. Int. Ed. 47, 7996–8000 (2008).
doi: 10.1002/anie.200801519
Longley, W. & McIntosh, T. J. A bicontinuous tetrahedral structure in a liquid-crystalline lipid. Nature 303, 612–614 (1983).
doi: 10.1038/303612a0
Prasad, I., Jinnai, H., Ho, R. M., Thomas, E. L. & Grason, G. M. Anatomy of triply-periodic network assemblies: characterizing skeletal and inter-domain surface geometry of block copolymer gyroids. Soft Matter 14, 3612–3623 (2018).
doi: 10.1039/C8SM00078F
Saba, M., Turner, M. D., Mecke, K., Gu, M. & Schröder-Turk, G. E. Group theory of circular-polarization effects in chiral photonic crystals with four-fold rotation axes applied to the eight-fold intergrowth of gyroid nets. Phys. Rev. B 88, 245116 (2013).
doi: 10.1103/PhysRevB.88.245116
Saba, M. et al. Circular dichroism in biological photonic crystals and cubic chiral nets. Phys. Rev. Lett. 106, 103902 (2011).
doi: 10.1103/PhysRevLett.106.103902
Kirkensgaard, J. J., Evans, M. E., de Campo, L. & Hyde, S. T. Hierarchical self-assembly of a striped gyroid formed by threaded chiral mesoscale networks. Proc. Natl Acad. Sci. USA 111, 1271–1276 (2014).
doi: 10.1073/pnas.1316348111
Casey, M. et al. Driving diffusionless transformations in colloidal crystals using DNA handshaking. Nat. Commun. 3, 1209 (2012).
doi: 10.1038/ncomms2206
Zhang, Y. et al. Selective transformations between nanoparticle superlattices via the reprogramming of DNA-mediated interactions. Nat. Mater. 14, 840–847 (2015).
doi: 10.1038/nmat4296
Mao, R., Pretti, E. & Mittal, J. Temperature-controlled reconfigurable nanoparticle binary superlattices. ACS Nano 15, 8466–8473 (2021).
doi: 10.1021/acsnano.0c10874
Du, C. X., van Anders, G., Newman, R. S. & Glotzer, S. C. Shape-driven solid–solid transitions in colloids. Proc. Natl Acad. Sci. USA 114, E3892–E3899 (2017).
doi: 10.1073/pnas.1621348114
Sandoval, L., Urbassek, H. M. & Entel, P. The Bain versus Nishiyama–Wassermann path in the martensitic transformation of Fe. New J. Phys. 11, 103027 (2009).
doi: 10.1088/1367-2630/11/10/103027
Lee, S., Leighton, C. & Bates, F. S. Sphericity and symmetry breaking in the formation of Frank–Kasper phases from one component materials. Proc. Natl Acad. Sci. USA 111, 17723–17731 (2014).
doi: 10.1073/pnas.1408678111
Li, B., Zhou, D. & Han, Y. L. Assembly and phase transitions of colloidal crystals. Nat. Rev. Mater. 1, 15011 (2016).
doi: 10.1038/natrevmats.2015.11
Hanfland, M., Syassen, K., Christensen, N. E. & Novikov, D. L. New high-pressure phases of lithium. Nature 408, 174–178 (2000).
doi: 10.1038/35041515
Hobbs, D., Hafner, J. & Spisak, D. Understanding the complex metallic element Mn. I. Crystalline and noncollinear magnetic structure of α-Mn. Phys. Rev. B 68, 014407 (2003).
doi: 10.1103/PhysRevB.68.014407
McMahon, M. I. & Nelmes, R. J. High-pressure structures and phase transformations in elemental metals. Chem. Soc. Rev. 35, 943–963 (2006).
doi: 10.1039/b517777b
Seddon, J. M. Structure of the inverted hexagonal (H
doi: 10.1016/0304-4157(90)90002-T
Iacovella, C. R., Keys, A. S. & Glotzer, S. C. Self-assembly of soft-matter quasicrystals and their approximants. Proc. Natl Acad. Sci. USA 108, 20935–20940 (2011).
doi: 10.1073/pnas.1019763108
Sun, H. J., Zhang, S. D. & Percec, V. From structure to function via complex supramolecular dendrimer systems. Chem. Soc. Rev. 44, 3900–3923 (2015).
doi: 10.1039/C4CS00249K
Lee, S., Bluemle, M. J. & Bates, F. S. Discovery of a Frank-Kasper σ phase in sphere-forming block copolymer melts. Science 330, 349–353 (2010).
doi: 10.1126/science.1195552
Ziherl, P. & Kamien, R. D. Maximizing entropy by minimizing area: towards a new principle of self-organization. J. Phys. Chem. B 105, 10147–10158 (2001).
doi: 10.1021/jp010944q
Li, T., Senesi, A. J. & Lee, B. Small angle X-ray scattering for nanoparticle research. Chem. Rev. 116, 11128–11180 (2016).
doi: 10.1021/acs.chemrev.5b00690
Park, J. et al. Direct observation of wet biological samples by graphene liquid cell transmission electron microscopy. Nano Lett. 15, 4737–4744 (2015).
doi: 10.1021/acs.nanolett.5b01636
Dabov, K., Foi, A., Katkovnik, V. & Egiazarian, K. Image denoising by sparse 3-D transform-domain collaborative filtering. IEEE Trans. Image Process. 16, 2080–2095 (2007).
doi: 10.1109/TIP.2007.901238
Nguyen, T. D., Phillips, C. L., Anderson, J. A. & Glotzer, S. C. Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units. Comput. Phys. Commun. 182, 2307–2313 (2011).
doi: 10.1016/j.cpc.2011.06.005
Glaser, J., Zha, X., Anderson, J. A., Glotzer, S. C. & Travesset, A. Pressure in rigid body molecular dynamics. Comput. Mater. Sci. 173, 109430 (2020).
doi: 10.1016/j.commatsci.2019.109430
Towns, J. et al. XSEDE: accelerating scientific discovery. Comput. Sci. Eng. 16, 62–74 (2014).
doi: 10.1109/MCSE.2014.80
Chandler, D., Weeks, J. D. & Andersen, H. C. Van der Waals picture of liquids, solids, and phase transformations. Science 220, 787–794 (1983).
doi: 10.1126/science.220.4599.787
Knorowski, C., Burleigh, S. & Travesset, A. Dynamics and statics of DNA-programmable nanoparticle self-assembly and crystallization. Phys. Rev. Lett. 106, 215511 (2011).
doi: 10.1103/PhysRevLett.106.215501
Angioletti-Uberti, S., Mognetti, M. B. & Frenkel, D. Theory and simulation of DNA-coated colloids: a guide for rational design. Phys. Chem. Chem. Phys. 18, 6373–6393 (2016).
doi: 10.1039/C5CP06981E
Rogers, W. B. & Crocker, J. C. Direct measurements of DNA-mediated colloidal interactions and their quantitative modeling. Proc. Natl Acad. Sci. USA 108, 15687–15692 (2011).
doi: 10.1073/pnas.1109853108
Li, T. I. N. G., Sknepnek, R., Macfarlane, R. J., Mirkin, C. A. & de la Cruz, M. O. Modeling the crystallization of spherical nucleic acid nanoparticle conjugates with molecular dynamics simulations. Nano Lett. 12, 2509–2514 (2012).
doi: 10.1021/nl300679e
Ramasubramani, V. et al. freud: a software suite for high throughput analysis of particle simulation data. Comput. Phys. Commun. 254, 107275 (2020).
doi: 10.1016/j.cpc.2020.107275
Steinhardt, P. J., Nelson, D. R. & Ronchetti, M. Bond-orientational order in liquids and glasses. Phys. Rev. B 28, 784–805 (1983).
doi: 10.1103/PhysRevB.28.784