The era of reference genomes in conservation genomics.

Biodiversity Genome Genomics
ERGA European Reference Genome Atlas biodiversity conservation conservation genetics

Journal

Trends in ecology & evolution
ISSN: 1872-8383
Titre abrégé: Trends Ecol Evol
Pays: England
ID NLM: 8805125

Informations de publication

Date de publication:
03 2022
Historique:
received: 25 04 2021
revised: 10 11 2021
accepted: 16 11 2021
pubmed: 29 1 2022
medline: 6 4 2022
entrez: 28 1 2022
Statut: ppublish

Résumé

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

Identifiants

DOI: 10.1016/j.tree.2021.11.008 PMID: 35086739
pubmed: 35086739
pii: S0169-5347(21)00313-X
doi: 10.1016/j.tree.2021.11.008
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

197-202

Investigateurs

Giulio Formenti (G)
Kathrin Theissinger (K)
Carlos Fernandes (C)
Iliana Bista (I)
Aureliano Bombarely (A)
Christoph Bleidorn (C)
Fedor Čiampor (F)
Claudio Ciofi (C)
Angelica Crottini (A)
José A Godoy (JA)
Jacob Hoglund (J)
Joanna Malukiewicz (J)
Alice Mouton (A)
Rebekah A Oomen (RA)
Sadye Paez (S)
Per Palsbøll (P)
Christophe Pampoulie (C)
María José Ruiz-López (MJ)
Hannes Svardal (H)
Constantina Theofanopoulou (C)
Jan de Vries (J)
Ann-Marie Waldvogel (AM)
Goujie Zhang (G)
Camila J Mazzoni (CJ)
Erich Jarvis (E)
Miklós Bálint (M)
Sargis A Aghayan (SA)
Tyler S Alioto (TS)
Isabel Almudi (I)
Nadir Alvarez (N)
Paulo C Alves (PC)
Isabel R Amorim (IR)
Agostinho Antunes (A)
Paula Arribas (P)
Petr Baldrian (P)
Paul R Berg (PR)
Giorgio Bertorelle (G)
Astrid Böhne (A)
Andrea Bonisoli-Alquati (A)
Ljudevit L Boštjančić (LL)
Bastien Boussau (B)
Catherine M Breton (CM)
Elena Buzan (E)
Paula F Campos (PF)
Carlos Carreras (C)
L FIlipe Castro (LF)
Luis J Chueca (LJ)
Elena Conti (E)
Robert Cook-Deegan (R)
Daniel Croll (D)
Mónica V Cunha (MV)
Frédéric Delsuc (F)
Alice B Dennis (AB)
Dimitar Dimitrov (D)
Rui Faria (R)
Adrien Favre (A)
Olivier D Fedrigo (OD)
Rosa Fernández (R)
Gentile Francesco Ficetola (GF)
Jean-François Flot (JF)
Toni Gabaldón (T)
Dolores R Galea Agius (DR)
Guido R Gallo (GR)
Alice M Giani (AM)
M Thomas P Gilbert (MTP)
Tine Grebenc (T)
Katerina Guschanski (K)
Romain Guyot (R)
Bernhard Hausdorf (B)
Oliver Hawlitschek (O)
Peter D Heintzman (PD)
Berthold Heinze (B)
Michael Hiller (M)
Martin Husemann (M)
Alessio Iannucci (A)
Iker Irisarri (I)
Kjetill S Jakobsen (KS)
Sissel Jentoft (S)
Peter Klinga (P)
Agnieszka Kloch (A)
Claudius F Kratochwil (CF)
Henrik Kusche (H)
Kara K S Layton (KKS)
Jennifer A Leonard (JA)
Emmanuelle Lerat (E)
Gianni Liti (G)
Tereza Manousaki (T)
Tomas Marques-Bonet (T)
Pável Matos-Maraví (P)
Michael Matschiner (M)
Florian Maumus (F)
Ann M Mc Cartney (AM)
Shai Meiri (S)
José Melo-Ferreira (J)
Ximo Mengual (X)
Michael T Monaghan (MT)
Matteo Montagna (M)
Robert W Mysłajek (RW)
Marco T Neiber (MT)
Violaine Nicolas (V)
Marta Novo (M)
Petar Ozretić (P)
Ferran Palero (F)
Lucian Pârvulescu (L)
Marta Pascual (M)
Octávio S Paulo (OS)
Martina Pavlek (M)
Cinta Pegueroles (C)
Loïc Pellissier (L)
Graziano Pesole (G)
Craig R Primmer (CR)
Ana Riesgo (A)
Lukas Rüber (L)
Diego Rubolini (D)
Daniele Salvi (D)
Ole Seehausen (O)
Matthias Seidel (M)
Simona Secomandi (S)
Bruno Studer (B)
Spyros Theodoridis (S)
Marco Thines (M)
Lara Urban (L)
Anti Vasemägi (A)
Adriana Vella (A)
Noel Vella (N)
Sonja C Vernes (SC)
Cristiano Vernesi (C)
David R Vieites (DR)
Robert M Waterhouse (RM)
Christopher W Wheat (CW)
Gert Wörheide (G)
Yannick Wurm (Y)
Gabrielle Zammit (G)

Informations de copyright

Copyright © 2021. Published by Elsevier Ltd.

Déclaration de conflit d'intérêts

Declaration of interests The authors declare no conflicts of interest.

Auteurs

Giulio Formenti (G)

The Rockefeller University, 1230 York Ave, New York, NY 10065, USA.

Kathrin Theissinger (K)

LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany; University of Koblenz-Landau, Institute for Environmental Sciences, Fortstrasse 7, 76829 Landau, Germany; Senckenberg Biodiversity and Climate Research Centre, Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany.

Carlos Fernandes (C)

CE3C - Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal; Faculdade de Psicologia, Universidade de Lisboa, Alameda da Universidade, 1649-013 Lisboa, Portugal.

Iliana Bista (I)

University of Cambridge, Department of Genetics, Cambridge CB2 3EH, UK; Wellcome Sanger Institute, CB10 1SA, Hinxton, UK.

Aureliano Bombarely (A)

Universita degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy.

Christoph Bleidorn (C)

University of Göttingen, Department of Animal Evolution and Biodiversity, Untere Karspüle, 2, 37073, Germany.

Claudio Ciofi (C)

University of Florence, Department of Biology, Via Madonna del Piano 6, Sesto Fiorentino (FI) 50019, Italy.

Angelica Crottini (A)

CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal.

José A Godoy (JA)

Estación Biológica de Doñana, Consejo Superior de Investigaciones Científicas, Av. Américo Vespucio, 26, 41092, Spain.

Jacob Höglund (J)

Dept. of Ecology and Genetics, Uppsala University, Norbyvägen 18D, 75246, Sweden.

Joanna Malukiewicz (J)

German Primate Center, Kellnerweg 4, 37077 Göttingen, Germany.

Alice Mouton (A)

InBios - Conservation Genetics Lab, University of Liege, Chemin de la Vallée 4, 4000, Belgium.

Rebekah A Oomen (RA)

Centre for Ecological and Evolutionary Synthesis, University of Oslo, Blindernveien 31, 0371 Oslo, Norway; Centre for Coastal Research, University of Agder, Gimlemoen 25j, 4630 Kristiansand, Norway.

Sadye Paez (S)

The Rockefeller University, 1230 York Ave, New York, NY 10065, USA.

Per J Palsbøll (PJ)

Groningen Institute of Evolutionary Life Sciences University of Groningen Nijenborgh, 9747, AG, Groningen, the Netherlands; Center for Coastal Studies, 5 Holway Avenue, Provincetown, MA 02657, USA.

Christophe Pampoulie (C)

Marine and Freshwater Research Institute, Fornubúðir, 5, 220 Hanafjörður, Iceland.

María J Ruiz-López (MJ)

Estación Biológica de Doñana, Consejo Superior de Investigaciones Científicas, Av. Américo Vespucio, 26, 41092, Spain.

Hannes Svardal (H)

Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Belgium.

Constantina Theofanopoulou (C)

The Rockefeller University, 1230 York Ave, New York, NY 10065, USA.

Jan de Vries (J)

University of Göttingen, Institute for Microbiology and Genetics, Dept. of Applied Bioinformatics, Goettingen Center for Molecular Biosciences (GZMB), Campus Institute Data Science (CIDAS), Goldschmidtstr. 1, 37077, Germany.

Ann-Marie Waldvogel (AM)

Institute of Zoology, University of Cologne, Zülpicherstrasse 47b, D-50674, Germany.

Guojie Zhang (G)

Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Denmark, Build 3, Universitetsparken 15, Copenhagen 2100, Denmark; China National Genebank, BGI-Shenzhen, Jinsha Road, Dapeng District, Shenzhen 518083, China.

Camila J Mazzoni (CJ)

Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Str 17, 10315 Berlin, Germany.

Erich D Jarvis (ED)

The Rockefeller University, 1230 York Ave, New York, NY 10065, USA.

Miklós Bálint (M)

LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany; Senckenberg Biodiversity and Climate Research Centre, Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany; Institute for Insect Biotechnology, Justus-Liebig University Gießen, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany. Electronic address: miklos.balint@senckenberg.de.

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Classifications MeSH

questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › The era of reference genomes in conservation genomics.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › The era of reference genomes in conservation genomics.
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › The era of reference genomes in conservation genomics.