Bacterial DNA excision repair pathways.
Journal
Nature reviews. Microbiology
ISSN: 1740-1534
Titre abrégé: Nat Rev Microbiol
Pays: England
ID NLM: 101190261
Informations de publication
Date de publication:
08 2022
08 2022
Historique:
accepted:
19
01
2022
pubmed:
26
2
2022
medline:
19
7
2022
entrez:
25
2
2022
Statut:
ppublish
Résumé
Bacteria are continuously exposed to numerous endogenous and exogenous DNA-damaging agents. To maintain genome integrity and ensure cell survival, bacteria have evolved several DNA repair pathways to correct different types of DNA damage and non-canonical bases, including strand breaks, nucleotide modifications, cross-links, mismatches and ribonucleotide incorporations. Recent advances in genome-wide screens, the availability of thousands of whole-genome sequences and advances in structural biology have enabled the rapid discovery and characterization of novel bacterial DNA repair pathways and new enzymatic activities. In this Review, we discuss recent advances in our understanding of base excision repair and nucleotide excision repair, and we discuss several new repair processes including the EndoMS mismatch correction pathway and the MrfAB excision repair system.
Identifiants
pubmed: 35210609
doi: 10.1038/s41579-022-00694-0
pii: 10.1038/s41579-022-00694-0
pmc: PMC9520609
mid: NIHMS1837283
doi:
Substances chimiques
DNA, Bacterial
0
DNA
9007-49-2
Types de publication
Journal Article
Review
Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
465-477Subventions
Organisme : NIGMS NIH HHS
ID : R35 GM131772
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM008353
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM145304
Pays : United States
Informations de copyright
© 2022. Springer Nature Limited.
Références
EMBO J. 2000 Aug 1;19(15):3857-69
pubmed: 10921868
Front Microbiol. 2020 Jul 02;11:1263
pubmed: 32714287
J Mol Biol. 2006 Apr 21;358(1):16-37
pubmed: 16497325
Cell. 2004 Mar 19;116(6):803-16
pubmed: 15035983
Mutat Res. 2013 Jan-Feb;741-742:1-10
pubmed: 23500083
DNA Repair (Amst). 2020 Jun;90:102866
pubmed: 32417669
Structure. 2016 Nov 1;24(11):1960-1971
pubmed: 27773688
Nature. 1966 Jan 29;209(5022):481-4
pubmed: 4958487
J Biol Chem. 1995 Oct 13;270(41):24174-9
pubmed: 7592621
Nucleic Acids Res. 2005 Jul 13;33(12):3837-44
pubmed: 16027108
Proc Natl Acad Sci U S A. 1973 Apr;70(4):1064-8
pubmed: 4577788
Biosci Rep. 1986 Jun;6(6):557-64
pubmed: 3021252
Cell. 2006 Jul 28;126(2):297-308
pubmed: 16873062
Curr Microbiol. 2010 Apr;60(4):263-7
pubmed: 19924481
Nucleic Acids Res. 2000 Jan 15;28(2):463-71
pubmed: 10606644
Radiat Res. 2001 Nov;156(5 Pt 2):572-6
pubmed: 11604074
Prog Nucleic Acid Res Mol Biol. 2004;77:37-65
pubmed: 15196890
Res Microbiol. 2016 Jan;167(1):4-12
pubmed: 26343983
Chem Res Toxicol. 2006 Apr;19(4):491-505
pubmed: 16608160
Methods. 2000 Oct;22(2):164-9
pubmed: 11020331
Genetics. 2018 Sep;210(1):99-112
pubmed: 30045856
Proc Natl Acad Sci U S A. 1989 Jul;86(14):5237-41
pubmed: 2546148
EMBO J. 2002 Aug 1;21(15):4196-205
pubmed: 12145219
Nat Chem Biol. 2017 Sep;13(9):1002-1008
pubmed: 28759018
Mutat Res Rev Mutat Res. 2015 Jan-Mar;763:294-305
pubmed: 25795127
Nucleic Acids Res. 2020 Jul 27;48(13):7005-7017
pubmed: 32409837
J Am Chem Soc. 2018 Apr 4;140(13):4522-4526
pubmed: 29578340
Curr Opin Immunol. 2019 Oct;60:96-102
pubmed: 31200187
Research (Wash D C). 2019 Aug 28;2019:5641746
pubmed: 31549070
PLoS One. 2019 Feb 6;14(2):e0211653
pubmed: 30726292
DNA Repair (Amst). 2016 Feb;38:32-41
pubmed: 26698649
J Biol Chem. 1989 Apr 25;264(12):6597-600
pubmed: 2651430
Nucleic Acids Res. 2012 Aug;40(15):7465-75
pubmed: 22641846
Proc Natl Acad Sci U S A. 1986 Sep;83(18):6702-6
pubmed: 3018744
Nucleic Acids Res. 2015 Sep 30;43(17):8452-63
pubmed: 26304551
Nucleic Acids Res. 1976 Apr;3(4):891-901
pubmed: 818624
Nat Struct Mol Biol. 2019 Jul;26(7):613-618
pubmed: 31235915
Mutat Res. 2005 Mar;589(2):111-35
pubmed: 15795165
Chem Biol. 2008 Jul 21;15(7):693-705
pubmed: 18635006
Mol Microbiol. 2013 Nov;90(4):680-98
pubmed: 23998896
Curr Biol. 2016 Mar 7;26(5):692-7
pubmed: 26923786
Nat Chem Biol. 2010 Oct;6(10):774-81
pubmed: 20729855
Mol Microbiol. 2019 Jan;111(1):237-253
pubmed: 30315724
J Antibiot (Tokyo). 1956 Jul;9(4):141-6
pubmed: 13385186
Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12942-7
pubmed: 23882084
Nucleic Acids Res. 2016 Jan 8;44(1):187-97
pubmed: 26400161
Nucleic Acids Res. 2021 Jan 11;49(1):504-518
pubmed: 33300032
Nat Struct Mol Biol. 2012 Feb 05;19(3):291-8
pubmed: 22307053
Nat Commun. 2017 Jan 27;8:14246
pubmed: 28128207
Crit Rev Biochem Mol Biol. 2008 Jul-Aug;43(4):239-76
pubmed: 18756381
Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4400-4405
pubmed: 28396405
Radiat Res. 1995 Jun;142(3):362-8
pubmed: 7761586
Braz J Infect Dis. 2012 Sep-Oct;16(5):466-71
pubmed: 22975171
Mol Cell. 2010 Jul 9;39(1):145-51
pubmed: 20603082
Nature. 2015 Nov 12;527(7577):254-8
pubmed: 26524531
J Bacteriol. 2006 Aug;188(15):5595-605
pubmed: 16855250
Nat Commun. 2016 Aug 26;7:12568
pubmed: 27562541
DNA Repair (Amst). 2007 Aug 1;6(8):1222-8
pubmed: 17500045
Cell Rep. 2014 Jan 30;6(2):346-56
pubmed: 24440721
Mol Microbiol. 2013 Feb;87(3):553-68
pubmed: 23228104
PLoS Pathog. 2011 Feb;7(2):e1001295
pubmed: 21379340
Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11733-11738
pubmed: 29078353
DNA Repair (Amst). 2014 Jul;19:27-37
pubmed: 24794402
Nat Rev Microbiol. 2015 Feb;13(2):83-94
pubmed: 25578955
J Bacteriol. 2016 Oct 21;198(22):3099-3108
pubmed: 27573016
EMBO J. 2018 Jan 4;37(1):63-74
pubmed: 29054852
Nucleic Acids Res. 2018 Jul 6;46(12):6152-6165
pubmed: 29878158
PLoS Pathog. 2013;9(11):e1003711
pubmed: 24244154
Cell. 2019 Jan 10;176(1-2):144-153.e13
pubmed: 30554877
Nucleic Acids Res. 2015 Dec 15;43(22):10746-59
pubmed: 26384423
DNA Repair (Amst). 2009 Jun 4;8(6):697-703
pubmed: 19269902
PLoS Genet. 2017 Jul 7;13(7):e1006881
pubmed: 28686598
Nature. 1998 Jun 11;393(6685):537-44
pubmed: 9634230
DNA Repair (Amst). 2020 Oct;94:102903
pubmed: 32663791
FEMS Microbiol Rev. 1997 Aug;21(1):43-54
pubmed: 9299701
Nucleic Acids Res. 2016 Apr 20;44(7):2977-86
pubmed: 27001046
Nat Struct Biol. 2002 Jul;9(7):544-52
pubmed: 12055620
DNA Repair (Amst). 2014 Aug;20:41-48
pubmed: 24472181
J Mol Biol. 2002 Jun 28;320(1):73-84
pubmed: 12079335
PLoS Genet. 2018 Jul 6;14(7):e1007512
pubmed: 29979679
J Biol Chem. 1992 Sep 5;267(25):17688-92
pubmed: 1387639
Trends Microbiol. 2007 Apr;15(4):172-80
pubmed: 17336071
Mol Cell. 2008 Feb 15;29(3):291-301
pubmed: 18280235
Mutat Res. 2010 Dec 10;694(1-2):20-30
pubmed: 20833188
Mol Microbiol. 2019 Feb;111(2):338-353
pubmed: 30379365
J Bacteriol. 2019 Mar 26;201(8):
pubmed: 30745368
Int J Mol Sci. 2021 Jan 19;22(2):
pubmed: 33477956
Nature. 1992 Jan 16;355(6357):273-5
pubmed: 1309939
DNA Repair (Amst). 2014 Jul;19:14-26
pubmed: 24780558
Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8376-80
pubmed: 11459978
Mutat Res. 2014 Mar;761:21-33
pubmed: 24495324
Trends Biochem Sci. 2019 Sep;44(9):765-781
pubmed: 31078398
DNA Repair (Amst). 2018 Nov;71:108-117
pubmed: 30181041
Nat Chem Biol. 2019 Jun;15(6):607-614
pubmed: 31101917
Nucleic Acids Res. 2021 Apr 6;49(6):3308-3321
pubmed: 33677508
Biochemistry. 1991 May 7;30(18):4432-43
pubmed: 1827034
Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11627-32
pubmed: 11573000
Cell. 1996 Jul 26;86(2):321-9
pubmed: 8706136
Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):E6898-906
pubmed: 26575623
J Am Chem Soc. 2016 Sep 14;138(36):11485-8
pubmed: 27571247
Mol Microbiol. 2011 Jan;79(2):316-30
pubmed: 21219454
Mol Cell. 2019 Aug 8;75(3):421-425
pubmed: 31398322
J Biol Chem. 1990 Dec 5;265(34):21337-41
pubmed: 2174442
Microbiol Mol Biol Rev. 2012 Sep;76(3):530-64
pubmed: 22933559
Mol Microbiol. 2011 Nov;82(3):648-63
pubmed: 21958350
Mol Microbiol. 2011 May;80(3):580-3
pubmed: 21375590
Mutat Res. 2001 Sep 4;486(4):217-47
pubmed: 11516927
Environ Mol Mutagen. 2017 Jun;58(5):235-263
pubmed: 28485537
Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):7022-5
pubmed: 1495996
J Mol Biol. 1992 Jul 20;226(2):425-32
pubmed: 1386387
Nat Chem Biol. 2019 Jun;15(6):615-622
pubmed: 31101915
Nucleic Acids Res. 2019 May 7;47(8):4136-4152
pubmed: 30892613
Cell. 2002 Jun 14;109(6):757-67
pubmed: 12086674
PLoS Genet. 2013 Nov;9(11):e1003878
pubmed: 24244177
Annu Rev Biochem. 1985;54:1151-93
pubmed: 2411210
Science. 2000 Mar 31;287(5462):2492-3
pubmed: 10741969
Proc Natl Acad Sci U S A. 1987 Jun;84(11):3638-42
pubmed: 3035542
Biochemistry. 1983 Sep 13;22(19):4518-26
pubmed: 6354260
Curr Biol. 1994 Dec 1;4(12):1069-76
pubmed: 7535646
DNA Repair (Amst). 2021 Jan;97:103024
pubmed: 33302090
J Biol Chem. 1988 May 15;263(14):6829-35
pubmed: 2834393
Nucleic Acids Res. 1998 Nov 15;26(22):5123-33
pubmed: 9801309
Adv Protein Chem. 2004;69:43-71
pubmed: 15588839
FASEB J. 2003 Jul;17(10):1195-214
pubmed: 12832285
Nucleic Acids Res. 2018 Jul 6;46(12):6206-6217
pubmed: 29846672
Proteins. 2013 Jan;81(1):132-9
pubmed: 22933319