Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.


Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Mar 2022
Historique:
received: 13 09 2021
accepted: 22 12 2021
entrez: 2 3 2022
pubmed: 3 3 2022
medline: 5 4 2022
Statut: ppublish

Résumé

Transglycosylating glycoside hydrolases (GHs) offer great potential for the enzymatic synthesis of oligosaccharides. Although knowledge is progressing, there is no unique strategy to improve the transglycosylation yield. Obtaining efficient enzymatic tools for glycan synthesis with GHs remains dependent on an improved understanding of the molecular factors governing the balance between hydrolysis and transglycosylation. This enzymatic and structural study of RBcel1, a transglycosylase from the GH5_5 subfamily isolated from an uncultured bacterium, aims to unravel such factors. The size of the acceptor and donor sugars was found to be critical since transglycosylation is efficient with oligosaccharides at least the size of cellotetraose as the donor and cellotriose as the acceptor. The reaction pH is important in driving the balance between hydrolysis and transglycosylation: hydrolysis is favored at pH values below 8, while transglycosylation becomes the major reaction at basic pH. Solving the structures of two RBcel1 variants, RBcel1_E135Q and RBcel1_Y201F, in complex with ligands has brought to light some of the molecular factors behind transglycosylation. The structure of RBcel1_E135Q in complex with cellotriose allowed a +3 subsite to be defined, in accordance with the requirement for cellotriose as a transglycosylation acceptor. The structure of RBcel1_Y201F has been obtained with several transglycosylation intermediates, providing crystallographic evidence of transglycosylation. The catalytic cleft is filled with (i) donors ranging from cellotriose to cellohexaose in the negative subsites and (ii) cellobiose and cellotriose in the positive subsites. Such a structure is particularly relevant since it is the first structure of a GH5 enzyme in complex with transglycosylation products that has been obtained with neither of the catalytic glutamate residues modified.

Identifiants

pubmed: 35234142
pii: S2059798321013541
doi: 10.1107/S2059798321013541
pmc: PMC8900817
doi:

Substances chimiques

Bacterial Proteins 0
Cellobiose 16462-44-5
Glycoside Hydrolases EC 3.2.1.-
Cellulase EC 3.2.1.4

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

278-289

Subventions

Organisme : Fonds De La Recherche Scientifique - FNRS
ID : IISN 4.4503.11F
Organisme : SOLEIL
ID : 20151139
Organisme : SOLEIL
ID : 20171555
Organisme : SOLEIL
ID : 20191372

Informations de copyright

open access.

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Auteurs

Laetitia Collet (L)

LABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.

Corinne Vander Wauven (C)

LABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.

Yamina Oudjama (Y)

LABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.

Moreno Galleni (M)

Center for Protein Engineering (CIP), Biological Macromolecules, University of Liège, 13 Allée du 6 Août, 4000 Liège, Belgium.

Raphaël Dutoit (R)

LABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.

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Classifications MeSH