Regulatory mechanisms behind the phenotypic plasticity associated with Setaria italica water deficit tolerance.
Monocots
Plant metabolism
SRNAs
Transcriptome
Transposable elements
Journal
Plant molecular biology
ISSN: 1573-5028
Titre abrégé: Plant Mol Biol
Pays: Netherlands
ID NLM: 9106343
Informations de publication
Date de publication:
Aug 2022
Aug 2022
Historique:
received:
20
12
2021
accepted:
11
04
2022
pubmed:
8
5
2022
medline:
30
7
2022
entrez:
7
5
2022
Statut:
ppublish
Résumé
Drought is one of the main environmental stresses that negatively impacts vegetative and reproductive yield. Water deficit responses are determined by the duration and intensity of the stress, which, together with plant genotype, will define the chances of plant survival. The metabolic adjustments in response to water deficit are complex and involve gene expression modulation regulated by DNA-binding proteins and epigenetic modifications. This last mechanism may also regulate the activity of transposable elements, which in turn impact the expression of nearby loci. Setaria italica plants submitted to five water deficit regimes were analyzed through a phenotypical approach, including growth, physiological, RNA-seq and sRNA-seq analyses. The results showed a progressive reduction in yield as a function of water deficit intensity associated with signaling pathway modulation and metabolic adjustments. We identified a group of loci that were consistently associated with drought responses, some of which were related to water deficit perception, signaling and regulation. Finally, an analysis of the transcriptome and sRNAome allowed us to identify genes putatively regulated by TE- and sRNA-related mechanisms and an intriguing positive correlation between transcript levels and sRNA accumulation in gene body regions. These findings shed light on the processes that allow S. italica to overcome drought and survive under water restrictive conditions.
Identifiants
pubmed: 35524936
doi: 10.1007/s11103-022-01273-w
pii: 10.1007/s11103-022-01273-w
doi:
Substances chimiques
RNA, Small Untranslated
0
Water
059QF0KO0R
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
761-780Subventions
Organisme : Fundação de Amparo à Pesquisa do Estado de São Paulo
ID : 2012/23838-7
Organisme : Fundação de Amparo à Pesquisa do Estado de São Paulo
ID : 2015/16975-6
Organisme : Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
ID : Scholarship
Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.
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