Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
05 07 2022
05 07 2022
Historique:
received:
20
05
2021
accepted:
14
06
2022
entrez:
5
7
2022
pubmed:
6
7
2022
medline:
8
7
2022
Statut:
epublish
Résumé
Plant response to drought stress involves fungi and bacteria that live on and in plants and in the rhizosphere, yet the stability of these myco- and micro-biomes remains poorly understood. We investigate the resistance and resilience of fungi and bacteria to drought in an agricultural system using both community composition and microbial associations. Here we show that tests of the fundamental hypotheses that fungi, as compared to bacteria, are (i) more resistant to drought stress but (ii) less resilient when rewetting relieves the stress, found robust support at the level of community composition. Results were more complex using all-correlations and co-occurrence networks. In general, drought disrupts microbial networks based on significant positive correlations among bacteria, among fungi, and between bacteria and fungi. Surprisingly, co-occurrence networks among functional guilds of rhizosphere fungi and leaf bacteria were strengthened by drought, and the same was seen for networks involving arbuscular mycorrhizal fungi in the rhizosphere. We also found support for the stress gradient hypothesis because drought increased the relative frequency of positive correlations.
Identifiants
pubmed: 35790741
doi: 10.1038/s41467-022-31343-y
pii: 10.1038/s41467-022-31343-y
pmc: PMC9256619
doi:
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
3867Informations de copyright
© 2022. The Author(s).
Références
Science. 2016 Feb 19;351(6275):826
pubmed: 26912889
Proc Natl Acad Sci U S A. 2019 Dec 5;:
pubmed: 31806758
Mol Ecol. 2017 May;26(9):2563-2575
pubmed: 28207957
Nat Microbiol. 2020 Aug;5(8):1002-1010
pubmed: 32393858
ISME J. 2014 Oct;8(10):1989-2001
pubmed: 24739625
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8577-82
pubmed: 16723398
Nat Rev Microbiol. 2020 Jan;18(1):35-46
pubmed: 31586158
Mol Ecol. 2022 Jan 9;:
pubmed: 35000239
Oecologia. 2012 Nov;170(3):821-33
pubmed: 22555357
Nat Commun. 2020 Jan 7;11(1):34
pubmed: 31911594
Mol Plant. 2017 Sep 12;10(9):1147-1158
pubmed: 28782719
Philos Trans R Soc Lond B Biol Sci. 2020 Mar 16;375(1794):20190112
pubmed: 31983338
mSystems. 2017 May 30;2(3):
pubmed: 28593197
Front Microbiol. 2013 Sep 05;4:265
pubmed: 24032030
Front Microbiol. 2014 May 20;5:219
pubmed: 24904535
Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19891-6
pubmed: 18056808
Proc Natl Acad Sci U S A. 2008 Aug 12;105 Suppl 1:11512-9
pubmed: 18695234
Nat Rev Microbiol. 2015 Mar;13(3):133-46
pubmed: 25659323
Microb Ecol. 2014 Aug;68(2):370-8
pubmed: 24743883
Science. 2015 Nov 6;350(6261):663-6
pubmed: 26542567
Nat Plants. 2018 May;4(5):247-257
pubmed: 29725101
Nat Commun. 2018 Aug 2;9(1):3033
pubmed: 30072764
Appl Environ Microbiol. 2017 Jun 30;83(14):
pubmed: 28476769
Front Microbiol. 2017 Nov 15;8:2224
pubmed: 29187837
Mol Ecol Resour. 2019 Nov;19(6):1552-1564
pubmed: 31482665
Microb Biotechnol. 2019 Nov;12(6):1464-1475
pubmed: 31536680
Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15979-15984
pubmed: 31270235
Front Microbiol. 2012 Dec 19;3:417
pubmed: 23267351
Trends Ecol Evol. 1994 May;9(5):191-3
pubmed: 21236818
Microbiome. 2021 Jul 3;9(1):153
pubmed: 34217365
Cell. 2018 Nov 1;175(4):973-983.e14
pubmed: 30388454
Front Microbiol. 2018 Aug 06;9:1755
pubmed: 30131780
Nature. 2020 Nov;587(7832):103-108
pubmed: 32999461
PLoS Biol. 2016 Jan 20;14(1):e1002352
pubmed: 26788878
Science. 2020 Apr 17;368(6488):266-269
pubmed: 32299946
BMC Bioinformatics. 2012 May 30;13:113
pubmed: 22646978
Nat Commun. 2019 Oct 24;10(1):4841
pubmed: 31649246
Ecology. 2007 Jun;88(6):1386-94
pubmed: 17601131
mBio. 2020 Jan 21;11(1):
pubmed: 31964728
Nature. 2002 Jun 20;417(6891):844-8
pubmed: 12075350
ISME J. 2019 Jan;13(1):214-226
pubmed: 30171254
ISME J. 2021 Jun;15(6):1722-1734
pubmed: 33452480
Nat Ecol Evol. 2020 Mar;4(3):376-383
pubmed: 32042124
PLoS Biol. 2016 Aug 24;14(8):e1002540
pubmed: 27557335
Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4284-E4293
pubmed: 29666229
Nature. 2017 Aug 9;548(7666):202-205
pubmed: 28796213
Nature. 2016 Jan 7;529(7584):84-7
pubmed: 26738594
ISME J. 2012 Feb;6(2):298-308
pubmed: 21850055
Front Microbiol. 2019 Dec 18;10:2887
pubmed: 31921064
ISME J. 2013 Nov;7(11):2229-41
pubmed: 23823489
Front Microbiol. 2015 Oct 27;6:1200
pubmed: 26579106
Science. 2020 Apr 17;368(6488):270-274
pubmed: 32299947
Ecol Lett. 2016 Aug;19(8):926-36
pubmed: 27264635
Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15760-15762
pubmed: 31320585
Front Genet. 2020 Apr 21;11:310
pubmed: 32373155
Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14647-51
pubmed: 26554004