Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates.
B3LYP vs. PBE-D3
amino acid
bifurcated H-bonds
macrocyclic ether
multicomponent crystals
periodic DFT computations
peroxosolvates
Journal
Molecules (Basel, Switzerland)
ISSN: 1420-3049
Titre abrégé: Molecules
Pays: Switzerland
ID NLM: 100964009
Informations de publication
Date de publication:
24 Jun 2022
24 Jun 2022
Historique:
received:
18
05
2022
revised:
20
06
2022
accepted:
21
06
2022
entrez:
9
7
2022
pubmed:
10
7
2022
medline:
14
7
2022
Statut:
epublish
Résumé
Energy/enthalpy of intermolecular hydrogen bonds (H-bonds) in crystals have been calculated in many papers. Most of the theoretical works used non-periodic models. Their applicability for describing intermolecular H-bonds in solids is not obvious since the crystal environment can strongly change H-bond geometry and energy in comparison with non-periodic models. Periodic DFT computations provide a reasonable description of a number of relevant properties of molecular crystals. However, these methods are quite cumbersome and time-consuming compared to non-periodic calculations. Here, we present a fast quantum approach for estimating the energy/enthalpy of intermolecular H-bonds in crystals. It has been tested on a family of crystalline peroxosolvates in which the H∙∙∙O bond set fills evenly (i.e., without significant gaps) the range of H∙∙∙O distances from ~1.5 to ~2.1 Å typical for strong, moderate, and weak H-bonds. Four of these two-component crystals (peroxosolvates of macrocyclic ethers and creatine) were obtained and structurally characterized for the first time. A critical comparison of the approaches for estimating the energy of intermolecular H-bonds in organic crystals is carried out, and various sources of errors are clarified.
Identifiants
pubmed: 35807323
pii: molecules27134082
doi: 10.3390/molecules27134082
pmc: PMC9268483
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Russian Foundation for Basic Research
ID : 20-03-00449
Références
Int J Mol Sci. 2022 Jun 04;23(11):
pubmed: 35682979
J Chem Phys. 2017 Mar 28;146(12):120901
pubmed: 28388098
J Phys Chem A. 2009 Oct 8;113(40):10845-51
pubmed: 19754097
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Apr;72(Pt 2):171-9
pubmed: 27048719
Acta Crystallogr C Struct Chem. 2015 Jan;71(Pt 1):3-8
pubmed: 25567568
Cryst Growth Des. 2014 Oct 1;14(10):4895-4900
pubmed: 26722225
Pharm Res. 2021 Aug;38(8):1307-1326
pubmed: 34302256
Phys Rev Lett. 1996 Oct 28;77(18):3865-3868
pubmed: 10062328
Molecules. 2022 Jan 22;27(3):
pubmed: 35163982
J Phys Chem B. 2012 Apr 19;116(15):4510-8
pubmed: 22429110
J Phys Chem B. 2016 Apr 28;120(16):3854-62
pubmed: 27045959
IUCrJ. 2017 Jul 04;4(Pt 5):575-587
pubmed: 28932404
J Chem Phys. 2019 Apr 14;150(14):144706
pubmed: 30981271
Phys Chem Chem Phys. 2010 Jul 28;12(28):7736-47
pubmed: 20495729
Phys Chem Chem Phys. 2005 Jun 7;7(11):2376-83
pubmed: 19785124
J Phys Chem A. 2008 Nov 20;112(46):11519-22
pubmed: 18959385
Acta Crystallogr E Crystallogr Commun. 2017 Oct 31;73(Pt 11):1793-1796
pubmed: 29152376
J Phys Chem B. 2015 Jun 18;119(24):7430-8
pubmed: 25636079
Molecules. 2020 Dec 23;26(1):
pubmed: 33374602
Acc Chem Res. 2017 May 16;50(5):1231-1239
pubmed: 28467707
Angew Chem Int Ed Engl. 2002 Jan 4;41(1):49-76
pubmed: 12491444
Acta Crystallogr Sect E Struct Rep Online. 2008 Sep 24;64(Pt 10):o2001
pubmed: 21201199
J Comput Chem. 2011 May;32(7):1456-65
pubmed: 21370243
Angew Chem Int Ed Engl. 2017 Nov 27;56(48):15241-15245
pubmed: 28991407
Chem Rev. 2000 Nov 8;100(11):4227-4252
pubmed: 11749345
Chem Commun (Camb). 2016 Jun 28;52(54):8342-60
pubmed: 27278109
Phys Chem Chem Phys. 2014 Feb 7;16(5):1759-87
pubmed: 24346191
Phys Chem Chem Phys. 2019 Aug 28;21(34):18501-18515
pubmed: 31411212
Phys Chem Chem Phys. 2022 May 4;24(17):10408-10419
pubmed: 35441620
Chem Rev. 2020 Aug 12;120(15):7152-7218
pubmed: 32598850
Chemistry. 2018 Apr 11;24(21):5401-5405
pubmed: 29283195
RSC Adv. 2019 Apr 23;9(22):12520-12537
pubmed: 35515880
Acta Crystallogr E Crystallogr Commun. 2020 Jul 21;76(Pt 8):1331-1335
pubmed: 32844024
J Phys Chem A. 2019 Apr 11;123(14):3185-3193
pubmed: 30896170
J Mol Graph Model. 2017 Aug;75:49-54
pubmed: 28505566
Chemistry. 2012 Apr 16;18(16):4982-93
pubmed: 22415967
Chem Rev. 2005 Jan;105(1):213-84
pubmed: 15729772
Molecules. 2020 May 21;25(10):
pubmed: 32455564
Phys Chem Chem Phys. 2021 Sep 22;23(36):20038-20051
pubmed: 34518858
J Comput Chem. 2020 May 15;41(13):1285-1298
pubmed: 32061114
J Phys Chem A. 2007 Feb 15;111(6):1155-62
pubmed: 17253671
J Chem Theory Comput. 2016 Jul 12;12(7):3340-52
pubmed: 27304925