Modeling-Guided Amendments Lead to Enhanced Biodegradation in Soil.


Journal

mSystems
ISSN: 2379-5077
Titre abrégé: mSystems
Pays: United States
ID NLM: 101680636

Informations de publication

Date de publication:
30 08 2022
Historique:
pubmed: 2 8 2022
medline: 2 8 2022
entrez: 1 8 2022
Statut: ppublish

Résumé

Extensive use of agrochemicals is emerging as a serious environmental issue coming at the cost of the pollution of soil and water resources. Bioremediation techniques such as biostimulation are promising strategies used to remove pollutants from agricultural soils by supporting the indigenous microbial degraders. Though considered cost-effective and eco-friendly, the success rate of these strategies typically varies, and consequently, they are rarely integrated into commercial agricultural practices. In the current study, we applied metabolic-based community-modeling approaches for promoting realistic

Identifiants

pubmed: 35913191
doi: 10.1128/msystems.00169-22
pmc: PMC9426591
doi:

Substances chimiques

Soil 0
Pesticides 0
Environmental Pollutants 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Pagination

e0016922

Références

Appl Environ Microbiol. 2002 Dec;68(12):5973-80
pubmed: 12450818
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Nucleic Acids Res. 2016 Jan 4;44(D1):D457-62
pubmed: 26476454
ISME J. 2019 Sep;13(9):2236-2251
pubmed: 31073212
J Hazard Mater. 2018 Feb 15;344:958-967
pubmed: 29197791
BMC Genomics. 2010 Sep 09;11:490
pubmed: 20828392
Biodegradation. 2014 Jul;25(4):615-32
pubmed: 24902896
Cell Rep. 2014 May 22;7(4):1104-15
pubmed: 24794435
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14
pubmed: 24293654
Nat Protoc. 2021 Nov;16(11):5030-5082
pubmed: 34635859
Metab Eng. 2020 Nov;62:138-149
pubmed: 32905861
J Cell Physiol. 2016 Nov;231(11):2339-45
pubmed: 27186840
Nucleic Acids Res. 2020 Jan 8;48(D1):D402-D406
pubmed: 31696234
Comput Struct Biotechnol J. 2020 Dec 15;19:226-246
pubmed: 33425254
Sci Rep. 2020 Aug 13;10(1):13727
pubmed: 32792675
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Nat Plants. 2018 May;4(5):247-257
pubmed: 29725101
Sci Total Environ. 2020 Aug 20;731:139183
pubmed: 32388161
Environ Sci Pollut Res Int. 2013 Jun;20(6):4078-84
pubmed: 23224504
Front Microbiol. 2019 Feb 13;10:87
pubmed: 30853940
Bioinformatics. 2014 Nov 1;30(21):3123-4
pubmed: 25061070
Bull Environ Contam Toxicol. 2009 Dec;83(6):832-5
pubmed: 19710994
Front Bioeng Biotechnol. 2021 Apr 15;9:602464
pubmed: 33937210
Microb Biotechnol. 2017 Nov;10(6):1500-1522
pubmed: 28925555
Nature. 2019 Nov;575(7781):109-118
pubmed: 31695205
ISME J. 2019 Feb;13(2):494-508
pubmed: 30291327
J Agric Food Chem. 2012 Mar 28;60(12):2967-75
pubmed: 22385283
ISME J. 2012 Mar;6(3):610-8
pubmed: 22134646
J Agric Food Chem. 2018 Feb 14;66(6):1330-1340
pubmed: 29345934
J Environ Manage. 2019 Sep 1;245:358-366
pubmed: 31158688
Curr Opin Biotechnol. 2021 Feb;67:184-191
pubmed: 33592536
J Sci Food Agric. 2019 Feb;99(3):986-1000
pubmed: 30191564
Biochem Soc Trans. 2018 Aug 20;46(4):931-936
pubmed: 30065105
Int J Environ Res Public Health. 2019 Dec 16;16(24):
pubmed: 31888127
Nat Commun. 2011 Dec 13;2:589
pubmed: 22158444
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515
pubmed: 30395287
FEMS Microbiol Lett. 2020 Jan 1;367(1):
pubmed: 31971561
mSystems. 2021 Dec 21;6(6):e0059921
pubmed: 34904863
Biodegradation. 2011 Apr;22(2):231-41
pubmed: 20680666
Sci Total Environ. 2018 May 15;624:1649-1657
pubmed: 29054631
PLoS Comput Biol. 2017 Feb 21;13(2):e1005404
pubmed: 28222096
J Hazard Mater. 2018 Feb 5;343:276-284
pubmed: 28988053
Chemosphere. 2018 Feb;193:118-125
pubmed: 29127836
ISME J. 2013 Jan;7(1):122-36
pubmed: 22832345
Chemosphere. 2009 Jan;74(2):187-92
pubmed: 19004466
Chemosphere. 2021 Jan;262:127830
pubmed: 32763580
J Hazard Mater. 2015 Apr 9;286:457-65
pubmed: 25603295
Microbiome. 2018 May 17;6(1):90
pubmed: 29773078
Environ Sci Pollut Res Int. 2011 Feb;18(2):328-31
pubmed: 21191660
Metab Eng. 2003 Oct;5(4):264-76
pubmed: 14642354
J Mol Biol. 2016 Feb 27;428(5 Pt B):837-61
pubmed: 26522937
Sci Rep. 2020 Aug 3;10(1):13019
pubmed: 32747737
ISME J. 2011 Mar;5(3):403-13
pubmed: 20861922
Nat Biotechnol. 2018 Jul 6;36(7):566-569
pubmed: 29979655
PLoS One. 2017 Aug 15;12(8):e0182556
pubmed: 28809955
J Bacteriol. 2012 Dec;194(24):6982-3
pubmed: 23209234
Bioinformatics. 2003 Mar 1;19(4):524-31
pubmed: 12611808
Front Genet. 2017 Jun 21;8:88
pubmed: 28680442
Microb Ecol. 2003 Aug;46(2):145-60
pubmed: 14708741
Nat Rev Mol Cell Biol. 2008 Oct;9(10):770-80
pubmed: 18797474
Nat Biotechnol. 2019 Aug;37(8):852-857
pubmed: 31341288
ISME J. 2016 Nov;10(11):2557-2568
pubmed: 27022995
J Environ Manage. 2020 Dec 15;276:111309
pubmed: 32882521
J R Soc Interface. 2016 Nov;13(124):
pubmed: 28334697
FEMS Microbiol Lett. 2010 Sep 1;310(1):1-8
pubmed: 20497226
J Hazard Mater. 2019 Oct 15;378:120859
pubmed: 31327574
Microb Biotechnol. 2017 Jan;10(1):19-21
pubmed: 27790851

Auteurs

Kusum Dhakar (K)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.
Department of Environmental Hydrology & Microbiology, Zuckerberg Institute for Water Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negevgrid.7489.2, Midreshet Ben-Gurion, Israel.

Raphy Zarecki (R)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.
Department of Environmental Hydrology & Microbiology, Zuckerberg Institute for Water Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negevgrid.7489.2, Midreshet Ben-Gurion, Israel.

Shlomit Medina (S)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

Hamam Ziadna (H)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

Karam Igbaria (K)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

Ran Lati (R)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

Zeev Ronen (Z)

Department of Environmental Hydrology & Microbiology, Zuckerberg Institute for Water Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negevgrid.7489.2, Midreshet Ben-Gurion, Israel.

Hanan Eizenberg (H)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

Shiri Freilich (S)

Newe Ya'ar Research Center, Agricultural Research Organizationgrid.410498.0, Ramat Yishay, Israel.

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Classifications MeSH